Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029018 [exp] 121 / 5e-36 AT3G46140 52 / 7e-17 Protein kinase superfamily protein (.1) Lus10034242 [exp] 114 / 6e-32 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034288 [exp] 72 / 1e-15 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 71 / 2e-15 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10026894 [exp] 51 / 3e-08 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034241 [exp] 40 / 6e-05 AT5G40080 137 / 5e-44 Mitochondrial ribosomal protein L27 (.1) Lus10031339 [exp] 38 / 0.0006 AT4G36950 100 / 3e-26 mitogen-activated protein kinase kinase kinase 21 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029024 pacid=23151856 polypeptide=Lus10029024 locus=Lus10029024.g ID=Lus10029024.BGIv1.0 annot-version=v1.0 ATGATCCCCGGAACGTTCCGGAACTTGGACAGAATGTCGAACTCCAAGAGGAGGGAGGAGGCTTTGTCCGCCGGCGCTGACTTCACAGCCATCAACGGAA GATTCGGGTTGTTGGGTTTGGCGACGAACACCTCTCCGGATGCTCCCCTTCCCAGTCGCTTGCCTCGTGTCCCACACACAGTCGCCCATGTTGCCGAAGG GAATAGGAATCTCAATCCTTTCGAAGCATACGTATCTCAGTGCCCAGTTGAAGCTAAAACAACTGAAGCTTCTGTACCAGCCAACCAAAAGGAAGCTCAC TGCAAAGTTTTGATCTTTAACTCGAATCTCAACGAGTACGAAGCTTACCATCGTGGTTCTGGGATCGAATCGGATTTCCTTATATTGGGTGCTTGA
AA sequence Show only first row Show all	>Lus10029024 pacid=23151856 polypeptide=Lus10029024 locus=Lus10029024.g ID=Lus10029024.BGIv1.0 annot-version=v1.0 MIPGTFRNLDRMSNSKRREEALSAGADFTAINGRFGLLGLATNTSPDAPLPSRLPRVPHTVAHVAEGNRNLNPFEAYVSQCPVEAKTTEASVPANQKEAH CKVLIFNSNLNEYEAYHRGSGIESDFLILGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029024 [exp]	0	1

Compare expression of checked genes

Lus10029024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.