Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40730 1180 / 0 CTEXP cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) AT1G22870 70 / 5e-12 Protein kinase family protein with ARM repeat domain (.1) AT1G71410 69 / 1e-11 ARM repeat superfamily protein (.1) AT5G66850 50 / 9e-06 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034240 [exp] 1491 / 0 AT2G40730 1216 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Lus10032279 [exp] 44 / 0.0009 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 44 / 0.001 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090500 [exp] 1249 / 0 AT2G40730 1144 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Potri.019G059200 [exp] 1233 / 0 AT2G40730 1172 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Potri.013G098700 [exp] 78 / 2e-14 AT1G71410 1177 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029025 pacid=23151744 polypeptide=Lus10029025 locus=Lus10029025.g ID=Lus10029025.BGIv1.0 annot-version=v1.0 ATGCTGAAATTCCTTAAAGGAGTTGTGGCTGGATCTGGGACTGGGATCAAGGATCTCCCTTACAACATCGGCGAACCTTACCCTTCCGCCTGGGGTTCTT GGACTCATCACCGTGGCACCTCCAAGGATGATGGTTCTGCAGTGTCAATATTTTGCCTCTCTGGAAGTAGTGCTCAGGATGGACATTTAGCAGCTGGGCG GAATGGTATCAAGCGTCTTCGAACTGTTAGGCACCCTAATATCCTGTCCTTCCTTCATAGTACTGAGCTCGAAGCTTTTGATGGCTCTATGTCCAAGGTT ACTTTATACATGGTCACCGAGCCAGTTATGCCACTTTCTGAGAAGATTAAGGAGCTTGGTTTGGAAGGCACACAAAGGGATGAGTATTATGCATGGGGGC TGAACCAGATTGCTAAAGCTGTGAGCTTTTTGAATAATGATTGTAAGCTTGTTCATGGTAATGTTTGCTTGTCCAGTGTTGTTGTCACTCCGACCTTGGA CTGGAAGTTGCATGCTTTTGATGTCCTATCAGAATTTGATGGCAACAATGCAAATGCATCTGGGCCAATGCTGCAATATGAGTGGTTGATCGGAGCACAA TATAAACCAATGGAGCTAGTGAAGTCTGATTGGCTTGCAATCAGAAAATCTCCACCTTGGGCCATTGATGCTTGGGGTTTGGGCTGTTTTATCAATGAAC TCTTTTCTGGTATAAAATTGGGAAAGACAGAGGAGCTACGCAATACTGCAGCCATTCCTAAGTCTTTGCTTCCTGATTATCAACGGCTACTGAGTTCTAT GCCTTCTCGCAGGATGAATGTATCAAAACTTATTGAGAATGGAGAGTACTTCCAGAATAAGTTAGTGGATACTATACATTTTATGGAGATTCTTACCTTG AAAGACAGTGTTGAGAAGGATACATTCTTCCGTAAACTTCCGAATTTAGCAGAGCAGCTTCCTCGTGAAATTGTACTTAAAAAGTTACTTCCTTTATTAG CTTCCTCCCTTGAGTTTGGATCTGCGGCTGCTCCTGCTTTAACAGCGTTGTTGAAGATGGGATCATGGCTTTCGGCTGAAGAATTTACTGTTAAAGTGTT GCCAACAATCGTAAAACTCTTTGCCTCCAATGATCGTGCCATTCGAGTTAGTCTACTTCAGCACATTGACTCATATGGGGAGTCATTATCAGCACAAGTG GTTGATGAGCAGGTCTATCCTCATGTTGCCACTGGTTTCTCTGACACTTCTGCTTTTCTTCGTGAATTGACTCTTAAATCCATGCTTACATTGGCTCCTA AGCTTTCTCACCGTACTATTTCAGGCTCTCTGTTGAAGTATCTTTCAAAGTTACAGGTTGATGAGGAGCCAGCAATTAGAACAAATACCACCATCCTACT TGGGAATATCGCAACCCACCTGAATGAAGGGACAAGGAAGAGGGTTCTAATCAATGCTTTCACTGTACGTGCACTGCGTGATACCTTTTCTCCAGCAAGG GGGGCAGGAGTAATGGCTTTGTCTGCTACTAGTTCTTATTATGATGCTACTGAAATAGCAACCCGGATTCTTCCAAGTATTGTCGTGCTCACCATTGATC CAGACAGTGATGTTCGAATGAAGTCATTTCAAGCTGTTGAGCAATTTTTGCAGATTGTAAAGCAATACCACGACAAGACTAGTTCGGGAGATGGCGATAC AAGCATCGGAATGTCATCTATACCAGGAAATGCCGGTTTGCTCGGATGGGCAATGAGTTCTTTGACTCTGAAAGGAGGAAAACCTTCTGAACAAGCTCCA CTTCCAACAGCAAATTCGGCCGCTTCTCTCACTACTGTCGTTTCCAATTCCAGCTCCGTGATGGATACTCAAAGTACAGCATCTGACCACGGAATGTCGA GCATGGACTTTGCTGATCAACCCGAGCCAAGTTCACCTACTTCAACGGACGGTTGGGGAGATGCCGAAAATGGAATCAGTGGAGATCATACTGACGAGAA GGATGGATGGGACGAGCTTGAGCCTCTTGAAGAAGCGAAACCAACTCCTGCTCTTGCGAGTATCCAAGCTGCTCAGAAACGGCCTGTTGCTCAACCGGTC TCGCAGGCAAAACAACCAGCAACCAGTGTGAGACCAAAGACTGCCGTCAAGATGCCAAACCATGAAGACGATGACTTGTGGGGTTCTATGGCAGCCCCTG CTCCAAAAACAGCAGCAAAATCTCTTAACGACGATTTGTGGGGCTCGATTGCAGCACCTGCACCAAAAACCGCATCGAGACCTTTGAAAGTCAAATCGAG CTCTTCCCTCGACAGCGAAGATCCATGGGCTGCTATCGCTGCTCCTCCTCCTACCACTCGGGCCAAGCCATTGTCTGCTGGGAGAGGACGAGGTTCAAAG CCTGCTGCTCTGAAACTCGGTGCACAGAAGATAAACCGGACCGGGTCATCTGGGGGTTTTTGA
AA sequence Show only first row Show all	>Lus10029025 pacid=23151744 polypeptide=Lus10029025 locus=Lus10029025.g ID=Lus10029025.BGIv1.0 annot-version=v1.0 MLKFLKGVVAGSGTGIKDLPYNIGEPYPSAWGSWTHHRGTSKDDGSAVSIFCLSGSSAQDGHLAAGRNGIKRLRTVRHPNILSFLHSTELEAFDGSMSKV TLYMVTEPVMPLSEKIKELGLEGTQRDEYYAWGLNQIAKAVSFLNNDCKLVHGNVCLSSVVVTPTLDWKLHAFDVLSEFDGNNANASGPMLQYEWLIGAQ YKPMELVKSDWLAIRKSPPWAIDAWGLGCFINELFSGIKLGKTEELRNTAAIPKSLLPDYQRLLSSMPSRRMNVSKLIENGEYFQNKLVDTIHFMEILTL KDSVEKDTFFRKLPNLAEQLPREIVLKKLLPLLASSLEFGSAAAPALTALLKMGSWLSAEEFTVKVLPTIVKLFASNDRAIRVSLLQHIDSYGESLSAQV VDEQVYPHVATGFSDTSAFLRELTLKSMLTLAPKLSHRTISGSLLKYLSKLQVDEEPAIRTNTTILLGNIATHLNEGTRKRVLINAFTVRALRDTFSPAR GAGVMALSATSSYYDATEIATRILPSIVVLTIDPDSDVRMKSFQAVEQFLQIVKQYHDKTSSGDGDTSIGMSSIPGNAGLLGWAMSSLTLKGGKPSEQAP LPTANSAASLTTVVSNSSSVMDTQSTASDHGMSSMDFADQPEPSSPTSTDGWGDAENGISGDHTDEKDGWDELEPLEEAKPTPALASIQAAQKRPVAQPV SQAKQPATSVRPKTAVKMPNHEDDDLWGSMAAPAPKTAAKSLNDDLWGSIAAPAPKTASRPLKVKSSSSLDSEDPWAAIAAPPPTTRAKPLSAGRGRGSK PAALKLGAQKINRTGSSGGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	0	1
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10037556 [exp]	2.4	0.8673
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	4.7	0.8699
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	5.2	0.8385
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	5.3	0.8554
AT2G16405			Transducin/WD40 repeat-like su...		Lus10028800 [exp]	6.3	0.8398
AT4G24840			unknown protein		Lus10009908 [exp]	8.1	0.8664
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10023796 [exp]	8.1	0.8309
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	9.8	0.8302
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	9.9	0.8275
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	13.6	0.8526

Compare expression of checked genes

Lus10029025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.