Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40660 422 / 6e-147 Nucleic acid-binding, OB-fold-like protein (.1) AT4G13780 168 / 6e-46 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT3G59980 110 / 8e-28 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034239 [exp] 678 / 0 AT2G40660 413 / 3e-143 Nucleic acid-binding, OB-fold-like protein (.1) Lus10016658 [exp] 175 / 3e-48 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10022571 [exp] 174 / 6e-48 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10027077 [exp] 116 / 1e-29 AT3G59980 284 / 4e-96 Nucleic acid-binding, OB-fold-like protein (.1) Lus10025611 [exp] 114 / 2e-28 AT3G59980 280 / 3e-94 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G058700 [exp] 495 / 8e-176 AT2G40660 396 / 6e-137 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G317500 [exp] 174 / 6e-48 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.017G057700 [exp] 170 / 1e-46 AT4G13780 1255 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.017G000200 [exp] 118 / 2e-30 AT3G59980 276 / 6e-93 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01588 [flax] [poplar] tRNA_bind Putative tRNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10029026 pacid=23151801 polypeptide=Lus10029026 locus=Lus10029026.g ID=Lus10029026.BGIv1.0 annot-version=v1.0 ATGGCTGGTAATGGAGCCTTCAACGTTGAAAGAAAGCAGAAGCTATCATCAGCTCTCTGCAAGCACTTCTGTGTATCGCCTCTGGGCGATGTTGGGAACT CCGATGTGAAGAGTTTGTACGAAAAAATCCTGACTTCATCAGGGAAATCCGCTCCATCGAATGTTCAAGACGAGGTGATGAAATGGATAGGATTTTCAGA GAGTTTTCCTCAAGACTCCAATGCATGCAGTCATGCTCTCAAGGGATTGAACGAAGAGCTGCTTACGAAATCTGTGCTTTTGGGGAATGGGTTGACGCCG TCTGAAGCTGATGTGATTGTGTTCTCTGCTATACATTCTGCTGTGATTGGTCTTCCAAAGTCCAAGAGCGAAGAATTGGTGCATGTATACAGATGGATGG ATTACATACAGTACAGGGAAGACTTCGGAGAAATATTTGAGAAAATACCACTAGAGAAGGAACGAGTGTACCCACAGGTGCTATACAAACCCAGTGCAGC AAAAGTTGAAGTAGAATCAAATACTAAGAAGACTGGACAAGACACAAAGAAGACAGAGAAGGTAGAAGCTGCCCAAAGCGCTAGCAAAAGTGAAACTAAG ACGAAGGGGCAAGCAAATAAGGAATCTACTGAGGAGAAGAAGAAACCAGCTCCAGCAGAAGCTGCTACCGAGAAAGATAAAGAATTAAGTGTTAGTTTGC TTAATATACAGGTCGGCCTTATTCGCAAAGCATGGAAACACCCATCAGCCGATAGTTTATTAGTTGAAGAAATAGATGTTGGGGAACCTAAGGTGAGGCA GGTGGTTAGTGGATTGGCAAAGTATTTCAGTCCAGAGCAGTTGACAAACCGCCGTGTTGCTTTGATAACAAATGTGAAACCAGGAAAGCTCCGAGACGTG ATGTCAGAAGGATTGGTTTTATGTGCTTCTAGTGAAGACCACACTGCCGTGGAACCACTACTTCCTCCAGAAGGTGCCAAAATCGGAGAACGCGTAACAT TCTCTGGGATCGATGGCAAGCCAGAAGATGTCCTCAACCCGAAAAAGAAGCAGTTGGACAAAATAACACCGAATCTATACACGGATGACAAGGGTGTGGC CACGTTCAAGGGCATACCTTTCATGACTTCTGGTGGACCATGCACATCTTCCATCTCGAAGGGAAGCATCAAATGA
AA sequence Show only first row Show all	>Lus10029026 pacid=23151801 polypeptide=Lus10029026 locus=Lus10029026.g ID=Lus10029026.BGIv1.0 annot-version=v1.0 MAGNGAFNVERKQKLSSALCKHFCVSPLGDVGNSDVKSLYEKILTSSGKSAPSNVQDEVMKWIGFSESFPQDSNACSHALKGLNEELLTKSVLLGNGLTP SEADVIVFSAIHSAVIGLPKSKSEELVHVYRWMDYIQYREDFGEIFEKIPLEKERVYPQVLYKPSAAKVEVESNTKKTGQDTKKTEKVEAAQSASKSETK TKGQANKESTEEKKKPAPAEAATEKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEPKVRQVVSGLAKYFSPEQLTNRRVALITNVKPGKLRDV MSEGLVLCASSEDHTAVEPLLPPEGAKIGERVTFSGIDGKPEDVLNPKKKQLDKITPNLYTDDKGVATFKGIPFMTSGGPCTSSISKGSIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10029026 [exp]	0	1
AT2G37990			ribosome biogenesis regulatory...		Lus10043278 [exp]	1.0	0.9595
AT2G24990			Serine/threonine-protein kinas...		Lus10002728 [exp]	3.0	0.9329
AT4G14320			Zinc-binding ribosomal protein...		Lus10038130 [exp]	5.5	0.9431
AT3G49100			Signal recognition particle, S...		Lus10018775 [exp]	7.5	0.9086
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10040479 [exp]	7.9	0.9129
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10003379 [exp]	9.8	0.9277
AT2G46230			PIN domain-like family protein...		Lus10010134 [exp]	10.4	0.9239
AT5G02610			Ribosomal L29 family protein ...		Lus10019179 [exp]	10.7	0.9311
AT5G08420			RNA-binding KH domain-containi...		Lus10026187 [exp]	11.4	0.8858
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	13.4	0.9132

Compare expression of checked genes

Lus10029026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.