Plant FIBer expression Database

Lus10029028 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40690 600 / 0 SFD1, GLY1 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
AT5G40610 95 / 4e-21 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034238
[exp]
597 / 0 AT2G40690 536 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Lus10022308
[exp]
98 / 4e-22 AT5G40610 607 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Lus10014889
[exp]
97 / 7e-22 AT5G40610 609 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G090900
[exp]
613 / 0 AT2G40690 612 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Potri.017G070900
[exp]
96 / 1e-21 AT5G40610 613 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0106 6PGD_C PF07479 NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
CL0063 NADP_Rossmann PF01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
Representative CDS sequence
>Lus10029028 pacid=23151747 polypeptide=Lus10029028 locus=Lus10029028.g ID=Lus10029028.BGIv1.0 annot-version=v1.0
ATGACGGCGCTGCAATTGCAACGACTGGAGCCACCGTTTCCATTTATTAACTTCACCTTCAATAGCAACAACAACAAAAACACAACACTGAAGAAAAATT
CACCAGCATCACATTCCCTCTCCCACTACACTCCCAAACAACGCTTCCTCCTCCCTCCTCTTTCTTGCTCGCAGGAAGAAACGCCGTCCCTCGACTCCGA
TAAGCCCTCCCTGGCCGTCGACCGGTTCATCGACCGCCGTAAAGTGGTCCGGCTGGCATGGGAGAAGCTACTCCGCTGGTCCCGCTCCTGGCGCTCCAAA
AACAACCCCGACGTCCTCCGTCGCACCAAAAAGGCAAGCACCGTCAACGTGGTGGTTCTTGGAGGAGGTTCGTTCGGTACATCCATGGCTGCTCATGTGG
CTAGTCGGAAATCCGATTTGGAAGTCCACATGCTTCTTCGTGACGAATTGCTCTGCCAATCTATCAATCTCCATCACTGTAATCGCAAGTATTTCCCTCA
ACACAAGCTCCCAGTTAACCTAATTGCTACGACCGATCCCAAAACTGCGATGCTCGGTGCGGATTACTGCTTCCACGCAGTTCCCGTCCAGTTTAGCTCG
ACGTTCCTGGAGAGCATTGCAGATAGTGTTGACCCTGGATTACCTTTCATATCTCTCAGTAAAGGATTAGAGCTTAACACATTGAGGACAATGTCTCAGA
TCATCCCTAAAGCATTGAAGAACCCTCGCCAGCCTTTTGTTGCTCTCTCCGGGCCTTCTTTTGCTCTTGAATTGATGAATAAGTTGCCAACAGCAATGGT
GGTTGCTTCAAAGGATAGGAAGTTGGCAAATGCAGCTCAGCAACTGCTCGCTTCGTCTCATTTACGAATCAGCACGTCAAGTGATGTCACAGGGGTGGAA
ATTGCAGGTGCGCTGAAAAATGTACTCGCCATAGCGGCTGGTATTGTTGAAGGCATGAATCTTGGTAATAATTCCATGGCAGCTCTTGTTACTCAAGGTT
GCTCCGAGATACGGTGGCTAGCAACAAAGATGGGAGCCAAGCCAGCTACACTTTCTGGTCTTTCGGGCACAGGAGACATTATGCTGACATGTTTCGTAAG
TCTATCGAGGAACAGGACAGTTGGAGTTCGCCTCGGATCAGGGGAGTGTCTTGATTCCATATTGAATTCCATGAATCAGGTTGCAGAAGGTGTATCAACG
GCTGGTGCAGTGGTTGCATTAGCTCAGAAGTACAATGTGAAGATGCCGGTTCTGACAGCAGTAGCTCGGATCATAGACAACGAGCTGACACCACATAAGG
CCGTTTTCGAATTGATGAGCCTTCCTCAGGTAGAAGAAGTGTGA
AA sequence
>Lus10029028 pacid=23151747 polypeptide=Lus10029028 locus=Lus10029028.g ID=Lus10029028.BGIv1.0 annot-version=v1.0
MTALQLQRLEPPFPFINFTFNSNNNKNTTLKKNSPASHSLSHYTPKQRFLLPPLSCSQEETPSLDSDKPSLAVDRFIDRRKVVRLAWEKLLRWSRSWRSK
NNPDVLRRTKKASTVNVVVLGGGSFGTSMAAHVASRKSDLEVHMLLRDELLCQSINLHHCNRKYFPQHKLPVNLIATTDPKTAMLGADYCFHAVPVQFSS
TFLESIADSVDPGLPFISLSKGLELNTLRTMSQIIPKALKNPRQPFVALSGPSFALELMNKLPTAMVVASKDRKLANAAQQLLASSHLRISTSSDVTGVE
IAGALKNVLAIAAGIVEGMNLGNNSMAALVTQGCSEIRWLATKMGAKPATLSGLSGTGDIMLTCFVSLSRNRTVGVRLGSGECLDSILNSMNQVAEGVST
AGAVVALAQKYNVKMPVLTAVARIIDNELTPHKAVFELMSLPQVEEV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G40690 SFD1, GLY1 SUPPRESSOR OF FATTY ACID DESAT... Lus10029028
[exp]
0 1
AT3G58570 P-loop containing nucleoside t... Lus10001074
[exp]
6.3 0.8279
AT3G10070 TAF12, TAFII58 TATA-ASSOCIATED FACTOR II 58, ... Lus10003250
[exp]
10.5 0.8289
AT3G16290 EMB2083 embryo defective 2083, AAA-typ... Lus10011432
[exp]
13.6 0.8169
AT3G25680 unknown protein Lus10035054
[exp]
15.7 0.8077
AT1G72040 P-loop containing nucleoside t... Lus10008257
[exp]
16.9 0.8250
AT4G34412 unknown protein Lus10014052
[exp]
17.7 0.8259
AT5G37850 SOS4, ATSOS4 SALT OVERLY SENSITIVE 4, pfkB-... Lus10009119
[exp]
19.9 0.7581
AT1G14810 semialdehyde dehydrogenase fam... Lus10030759
[exp]
27.6 0.8096
AT3G58570 P-loop containing nucleoside t... Lus10030075
[exp]
33.2 0.7682
AT3G20240 Mitochondrial substrate carrie... Lus10034806
[exp]
37.9 0.7365

Lus10029028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.