Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05230 206 / 1e-62 RING/U-box superfamily protein (.1) AT2G40640 187 / 2e-55 RING/U-box superfamily protein (.1.2.3) AT3G19895 142 / 3e-37 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034237 [exp] 525 / 0 AT5G05230 229 / 2e-71 RING/U-box superfamily protein (.1) Lus10034201 [exp] 134 / 3e-34 AT3G19895 662 / 0.0 RING/U-box superfamily protein (.1) Lus10000199 [exp] 53 / 1e-07 AT3G19895 352 / 3e-119 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G058300 [exp] 297 / 6e-97 AT5G05230 285 / 1e-92 RING/U-box superfamily protein (.1) Potri.008G085700 [exp] 145 / 5e-38 AT3G19895 707 / 0.0 RING/U-box superfamily protein (.1) Potri.010G171100 [exp] 137 / 2e-35 AT3G19895 701 / 0.0 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029029 pacid=23151824 polypeptide=Lus10029029 locus=Lus10029029.g ID=Lus10029029.BGIv1.0 annot-version=v1.0 ATGTCCACTAATGATATATCCCTAGTCTCTTCTTCTCCGACCATCCTCAATTCCCAGCTCATCTACCATGAAAACCCATTGGGCTTCACTTCTCATCGCC CGCTCGGCGATCCGGGTCCTAAAACCCGAGAGCTCGCCGGTTTCATCGACGACAAGCTGTTACCCTCTTCTTCCTCTCCCGGAGCCGCCAACCGCTACAT TGCCTCCGATCAACAACACCGCCGAGGTCCCGATGTCTACCGGGGTGGTGATCGTAATTGGAGTGCCAATGGGAACGAAACCAGCGCTGATGATGAATCG GATGACGAGGAAGAGAAGGAGGAGTACGACGACTCCGATGAAGACGATGAGGAAGCTGGAGGAACTGTAGGCGTTGGTGTTAACGGTAGGAGCAGTGGTA AACACAATGGTAGTAACAACGAGAAGACCAGTAACAGTGACGGTATTCACGGTGGAGGCGATCTCTTAGAAAAAATGGGAAATGGGAATGCGAAAGCCAA GGATTTTGCATCTTATAGGTCTAGTGGGGCAGTGATGGTATTAAAAGATGGAGGTGACGGAGGACGAACTGCAAATGCAGGAGTAACGATAGCAAACCTG GATGGTGAAATGTTGTATTCACGGTACTTGGAAACAGCAGATGGTTCTGGTGGCAAGAGGAAGGATGGTTCTTCGTTAACAAATGAGTCAGGAGAGTCTT TGAGGGCCATTCTTTCGGATCCCGTGACGGGAGCTCTGATGGATGATGCAATGATACTGTTGTGTGGCCATTCGTTTGGAAATGGAGGTGTACAGCATGC TCTAAGAATAGTTGGTTCCAAACTCTGCTGCCTGTTATTTTCAGGATTGACCATTTGCAAGCGTCTTGACAAAGTGTTCATTTTCACACTACGGGCTGCT GTACAGGCATACCGGCGAGAAGAGGAGTTGCAAAGTTTCCGGTCACCCAAGAGGAAGAGAGATAGATTTGAGGAGAGGGGTAGTTATGGTGATGCAAACT CCATGGATCCACCAAGGGGTAGAGGTGTTCAGTTCCCGTTCTCTGTTACTGACAGAGTCATAATAAAGGGAAACAAAAGGACACCAGAGCGTTTTGTTGG ACGTGAGGCTATCGTTACCACACAATGCTTAAATGGATGGTATGTGGTTAAGACCTTGGACAATGCCGAGAGCGTAAAACTGCAATATCGATCCCTGGCT AAAGTTACGCACGGTTCATCCTTGGAGCACTTGTCAAGTAAGATGACTCCCACCTGGCTATAG
AA sequence Show only first row Show all	>Lus10029029 pacid=23151824 polypeptide=Lus10029029 locus=Lus10029029.g ID=Lus10029029.BGIv1.0 annot-version=v1.0 MSTNDISLVSSSPTILNSQLIYHENPLGFTSHRPLGDPGPKTRELAGFIDDKLLPSSSSPGAANRYIASDQQHRRGPDVYRGGDRNWSANGNETSADDES DDEEEKEEYDDSDEDDEEAGGTVGVGVNGRSSGKHNGSNNEKTSNSDGIHGGGDLLEKMGNGNAKAKDFASYRSSGAVMVLKDGGDGGRTANAGVTIANL DGEMLYSRYLETADGSGGKRKDGSSLTNESGESLRAILSDPVTGALMDDAMILLCGHSFGNGGVQHALRIVGSKLCCLLFSGLTICKRLDKVFIFTLRAA VQAYRREEELQSFRSPKRKRDRFEERGSYGDANSMDPPRGRGVQFPFSVTDRVIIKGNKRTPERFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLA KVTHGSSLEHLSSKMTPTWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05230			RING/U-box superfamily protein...		Lus10029029 [exp]	0	1
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	6.2	0.7694
AT2G25920			unknown protein		Lus10001457 [exp]	7.5	0.6982
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	11.1	0.7765
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	17.3	0.7030
AT1G14180			RING/U-box superfamily protein...		Lus10002316 [exp]	20.1	0.6899
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	22.2	0.7264
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	22.7	0.7237
AT3G09430			unknown protein		Lus10023771 [exp]	39.2	0.5936
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	46.5	0.6357
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	46.6	0.6204

Compare expression of checked genes

Lus10029029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.