Plant FIBer expression Database

Lus10029030 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05240 280 / 2e-87 Uncharacterised conserved protein (UCP030365) (.1)
AT2G40630 129 / 1e-31 Uncharacterised conserved protein (UCP030365) (.1)
AT5G65120 42 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034236
[exp]
988 / 0 AT5G05240 312 / 9e-100 Uncharacterised conserved protein (UCP030365) (.1)
Lus10030527
[exp]
149 / 3e-40 AT2G40630 169 / 6e-48 Uncharacterised conserved protein (UCP030365) (.1)
Lus10016802
[exp]
50 / 3e-06 AT5G65120 160 / 2e-46 unknown protein
Lus10022498
[exp]
48 / 1e-05 AT5G10110 164 / 7e-48 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G058200
[exp]
441 / 3e-149 AT5G05240 301 / 2e-95 Uncharacterised conserved protein (UCP030365) (.1)
Potri.013G091100
[exp]
200 / 1e-57 AT5G05240 259 / 3e-80 Uncharacterised conserved protein (UCP030365) (.1)
Potri.013G157700
[exp]
92 / 8e-20 AT5G05240 103 / 8e-24 Uncharacterised conserved protein (UCP030365) (.1)
Potri.007G090500
[exp]
49 / 4e-06 AT5G65120 176 / 2e-52 unknown protein
Potri.005G077400
[exp]
43 / 0.0005 AT5G10110 150 / 2e-42 unknown protein
PFAM info
Representative CDS sequence
>Lus10029030 pacid=23151687 polypeptide=Lus10029030 locus=Lus10029030.g ID=Lus10029030.BGIv1.0 annot-version=v1.0
ATGGAAGAGCAAGCCGATTATCGGGTTCCGGAGAGATCTACTGCTTCTAAGATGGTCGGCGATAAGCGAGGCTGTGACGAACTGGAGGCGGGAGATCAGG
AGATCACTTGCAGACGAGTTAAAATGAAAAATCTGGACTCTGTGTTGACTGCTAAAGATGCTGATTCTTCTCAACTTGAAAGAAGTGTGACGAAGAGTTT
GACAAGGTCAGCTGACTTTAATAACGTACCGGGACAGTTGGATCTCAATAGTGAAGCTTGTATCGGGCGTGTACATAACAAGTCTATGATGATGTCCCAA
GGAGTGTGTTTGGATCTCAACGCAGAAGAAGTGGCTAGCTCGGTTGTGAACAGCGACCAGTTTTACCCTAGCAAGAGTCATAAAAGCAGGCAGAAACCGA
GGGATAATGTGTCTGAATGCGCGAGTGCTATAGGTTCTCCCACCGTGGTGGTGGATAAAGATCCCTTGAAAGTTTGGAAGGAGATGAAGCAGAACGGCTT
CCTGTCGTCTCCTCATGGCGGGATATCGAGCCACAGCAATCTCGTCTCGAATTCTTCTTCTGCACAAGGACTCCATGCCCCACATGGAGGAGTACCGGTG
CCTAAGCAACGAGGGAGGAAGCCGAAGAACAACACCATGAAGAGAAGAATGGAGCTTGCGAAGAAAGAGCATGTGGATAGATTCACAAAGATTGCAGCTC
CCAGTGGTCTGCTGAATGATTTGAACCCTGGGATTATTAACCATGTGAGGAACAGCAGACAGGTCCGCTCGATAATCGAGGCCTTAGTGAAGTCCGAGAA
GCTCGACAACAGTCGTGCAGAGAGTCAGAGGGCCGGAAGCAAAGGGCCTGCTGGGATGATGACTAGCTCACATGCGTACGATTCGAACTTATTCTCTTGT
GGGAATGAATGCTCCGCTGCTGTTTTTGGAAGCAAACAAATGGAAGCAGGATTCAAGGTATCAACCAGAGAGGGTAATTCCAGCACTGTAGGGGAGATCC
CTGGCGAAAGTACTCTCTCATACTCTCGCCCTGTTGAAGAAAATGATAATACACCACCGTTTGTAAACTTATCGTCTTCAATGAAGGCGTCCGGGGAATC
TAGCAGTGTTTCTAACAATGAATCTGCAGATGTCACTAATGCCTCCTCTCTCTCTGTCAAAGCTGCAAGTGTTGCTTCACAGTGGTTGGAGCTACTTCAG
CAAGACATCAAAGGACGCCTAACTGCTTTGCGTCGCAGCAAGAAGAGGGTGAGAGACGTCATAACAACCGACTTACCTTTGTTAGTATCAAAAGAATTCG
GCTCCTCCAACCAAGAGAATAATCCTCACGCTGCTGCTTCTCCTCCGGTCTCCCTTAACGCAACTGCTGCAATGCATCAAGCAAGATGGACCCAGTTGTT
TGATCAAATGGATAAAGCACTCGCTGAAGAACAAAGGCAGCTTGAAAGTTGGCTGAACCAGTTGAAAGAAATGCAACTGCACTGTGATCAGGGCTTGCAG
CATTTCCAATGGAACGCTATCGTCGGATTCCAACCTCCAGGAATGCCCGAAAACTACAGAATCCCGAAGCCGGATAGCTCGGAGAAGGAACTGGCCGTGA
GGGCAGCTGCAGCTTCCATATACTCGACGTGCAATTTCTTGACATCGAAGGAGAATGTATCGTGCTTCTGA
AA sequence
>Lus10029030 pacid=23151687 polypeptide=Lus10029030 locus=Lus10029030.g ID=Lus10029030.BGIv1.0 annot-version=v1.0
MEEQADYRVPERSTASKMVGDKRGCDELEAGDQEITCRRVKMKNLDSVLTAKDADSSQLERSVTKSLTRSADFNNVPGQLDLNSEACIGRVHNKSMMMSQ
GVCLDLNAEEVASSVVNSDQFYPSKSHKSRQKPRDNVSECASAIGSPTVVVDKDPLKVWKEMKQNGFLSSPHGGISSHSNLVSNSSSAQGLHAPHGGVPV
PKQRGRKPKNNTMKRRMELAKKEHVDRFTKIAAPSGLLNDLNPGIINHVRNSRQVRSIIEALVKSEKLDNSRAESQRAGSKGPAGMMTSSHAYDSNLFSC
GNECSAAVFGSKQMEAGFKVSTREGNSSTVGEIPGESTLSYSRPVEENDNTPPFVNLSSSMKASGESSSVSNNESADVTNASSLSVKAASVASQWLELLQ
QDIKGRLTALRRSKKRVRDVITTDLPLLVSKEFGSSNQENNPHAAASPPVSLNATAAMHQARWTQLFDQMDKALAEEQRQLESWLNQLKEMQLHCDQGLQ
HFQWNAIVGFQPPGMPENYRIPKPDSSEKELAVRAAAASIYSTCNFLTSKENVSCF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G05240 Uncharacterised conserved prot... Lus10029030
[exp]
0 1
AT1G79730 ELF7 EARLY FLOWERING 7, hydroxyprol... Lus10037558
[exp]
3.2 0.9044
AT1G54610 Protein kinase superfamily pro... Lus10012805
[exp]
4.0 0.9133
AT5G48030 GFA2 gametophytic factor 2 (.1) Lus10035855
[exp]
4.2 0.9037
AT5G05680 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEF... Lus10040194
[exp]
4.2 0.9113
AT1G15750 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOP... Lus10023119
[exp]
4.5 0.9086
AT1G38065 O-fucosyltransferase family pr... Lus10025631
[exp]
5.7 0.8943
AT1G32930 Galactosyltransferase family p... Lus10008282
[exp]
8.1 0.8739
AT5G18230 transcription regulator NOT2/N... Lus10020262
[exp]
9.4 0.9000
AT4G35800 RNA_POL_II_LSRN... RNA polymerase II large subuni... Lus10028403
[exp]
10.6 0.9131
AT5G65930 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN... Lus10009426
[exp]
10.9 0.9016

Lus10029030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.