Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56360 132 / 2e-37 unknown protein AT5G05250 130 / 2e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034235 [exp] 286 / 4e-98 AT3G56360 149 / 9e-45 unknown protein Lus10030528 [exp] 197 / 7e-63 AT5G05250 147 / 1e-43 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G058000 [exp] 163 / 1e-49 AT3G56360 162 / 9e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029031 pacid=23151762 polypeptide=Lus10029031 locus=Lus10029031.g ID=Lus10029031.BGIv1.0 annot-version=v1.0 ATGGCGACGACGACAACAGTAGCAATAACGGTACTGATCATCATCTGCAGGCTAACGACAACGGCCGATGCGAAAACAGTGCAACGCGGCAATGACGGTG ACAAATTGCAGATCACGGTGGAGTGCAGCTCGAAAGATAACCCATGCCATTGGAACTCCTCAACTTCGGCGACAAATACTTTGTCGAACCGAAGACACTC TTCTGGTGCGATCTCGCGGTACCGGGAGAAAACATGCGTCTTCATTACGACGCATTCAATCGTTCCAAGAACGGAATTCGCAACTTGTACTCAAGCCTCA ATCGAGCTGGCTCGCGAGCCAGCCGAGCCGAGCCAAAAATTCACTCCGCCGGAGCACCCAAATCTCTCTATTAGGGATTCTTGGCTCAGGGATCCGGTGA CGGAGACCGTGAACAACCTGGGGGAGGCGCCGCTGCTGGTGCAGGTGTACGCCGACGAAGGGAAGAAGAAATTGGACACGGAGAAGGCGGTGGAGGAAGG GGATTGGAAGAGGCTGATCGAAAAATGGAAGAAGAGGGATGCGCCGCTGCCGGAAGGGGTGATATTCGTCGAGCAGTTAAACGACGGCGGCGAGGAGGCG GCGGAGGCGTGGGGGGTCGTGGTTCAGGGGAAAGGAGGCGAGTGCGGTGGGCCAGCGTGCTACTTGCTGAAGACGAGCCGGGTCGGGTCGGGAGTGGGCC TGGGCTGCACCCATTTCTGCTTGATGCGGGTCAAGAGCTTTAGGGAGAGCGCCAAGTCGCAGCTGAAGAACTGCTGGCTGTTGCAGGCCCAATATGGCTC GGATCGAGTGTGCTGA
AA sequence Show only first row Show all	>Lus10029031 pacid=23151762 polypeptide=Lus10029031 locus=Lus10029031.g ID=Lus10029031.BGIv1.0 annot-version=v1.0 MATTTTVAITVLIIICRLTTTADAKTVQRGNDGDKLQITVECSSKDNPCHWNSSTSATNTLSNRRHSSGAISRYREKTCVFITTHSIVPRTEFATCTQAS IELAREPAEPSQKFTPPEHPNLSIRDSWLRDPVTETVNNLGEAPLLVQVYADEGKKKLDTEKAVEEGDWKRLIEKWKKRDAPLPEGVIFVEQLNDGGEEA AEAWGVVVQGKGGECGGPACYLLKTSRVGSGVGLGCTHFCLMRVKSFRESAKSQLKNCWLLQAQYGSDRVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56360			unknown protein		Lus10029031 [exp]	0	1
AT5G05250			unknown protein		Lus10030528 [exp]	1.4	0.8393
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10001682 [exp]	9.2	0.8313
AT1G21550			Calcium-binding EF-hand family...		Lus10000972 [exp]	19.4	0.8377
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	21.0	0.7999
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	22.4	0.7688
AT1G16840			unknown protein		Lus10034821 [exp]	25.2	0.7121
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	26.5	0.7616
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10042802 [exp]	33.6	0.7271
AT4G16400			unknown protein		Lus10004418 [exp]	37.4	0.7941
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10006935 [exp]	40.1	0.7372

Compare expression of checked genes

Lus10029031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.