Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79150 754 / 0 binding (.1) AT2G17250 46 / 0.0001 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034234 [exp] 1462 / 0 AT1G79150 867 / 0.0 binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G096900 [exp] 913 / 0 AT1G79150 850 / 0.0 binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07540 [flax] [poplar] NOC3p Nucleolar complex-associated protein PF03914 [flax] [poplar] CBF CBF/Mak21 family
Representative CDS sequence Show only first row Show all	>Lus10029032 pacid=23151728 polypeptide=Lus10029032 locus=Lus10029032.g ID=Lus10029032.BGIv1.0 annot-version=v1.0 ATGGCAGTATTAGTTTATTGTCTGGCAACGAGCGATGTGGCTTCATCAAACATTATCATTCGTGATGACCTAAAAAATGTTATCAAGGAAGGGTCACCCG CCATTGCCGTTTCCTGCTCGCCTCCAGCCGGCGTTCCTCCTCAGTTGTCAGAACTTGGTTTTACGGTCGTCGCCGTTTGTGGGTTTTCCTCTATCTGGTG TATCAGTTCAAGTTGGTCTCACAGCCGTCGTTTTCCTGTCGCGCCGTTTATCCAGCTGGTACGAATGGGGAGGAAGAAGCAGCAGAAGAAGACGGTGTTG CCTCCAGCTCTCCCGCCGGAGGTCCCAGAGGATGAAATAGAAGTCTCGGACGAGGACTTGGAGTTTGTCACCAAGAATCAAGATTTTGCCGGTTTTCTCA CTAAATTGGACACCCGGAGCATCGACAAGCATGTGAACCGAGTGACTGATGCAAAAGGTAAAAAAGTGGAAGATGATGCTCTTGAGGCTTTATACGAGGA GCGGTTGTGCAAGAGATCGATAGAGGATGAGAAGAAAGAGAAGAAGGTCGAAGTTGATCCAGTCCATGAACTTCCCGTGAAGACTTTGGACGGACAGCTC TATTATGTGAAGAAGAGTGAAGATAAAAGGACTGAAGATGTAGAAGATGGGGATGATCAGAAGGATATTGGTATGGTAAGGTTAACCAAGGCTGAAAAGA GGGCTAAGTTCAAAAAGGCCAGGAAAGAGGCCAAGAAACTAGCTGATTTCTCCACTGACGCTGAAGAGACAGTAGACGAAGAAGCTCCACAGGCTGCTGC ACTGGCAGAAATTAAGAAGGATCTAACGGCAGAAGAAATATTTGAAAGCAAGAAGCAGAAACTTGCGGAGCTTGGACTTGCATTGCAAGCCGATCCTGAG GAAAATATAAAGTCGCTGAAAGAACTACTTCAGTTATGCCGGGACTATGATCCAAACATAGTGAAACTGAGCGTGTTGTCCTTACTTGCTGTTTTCAAAA GTATAATCCCTGGATATCGAATAAGGCTTCCAACGGATAAGGAGCTAGAGATGAAAGTTTCCAAGGAAGTGAAGAAGACTCGATTGTACGAATCAACACT TTTGTCCACATACAAGGCATACCTGCAGCGTCTTGTGGTACTCCAGAAAGACTCCAAATTTCAGCATGTTGCTGTCCGTTGTTTATGCACTATGCTGGAT GCAGCTCCGCACTTCAACTTCTGGGAAGGCTTGTTAACTGCCGTGGTAGCAAACATAGGTTCCCCAGATGATGTTATAAGGTTCCACCTTGTTGTCTATC TTTTCTGGTTCTGTTGTTTCTTGAAGATTGTTGCTTATGGGATAGTTTTCCGTGTAAGTATTCATCCTTTCTTTCTTCCTTTGGACAGAAAACTTAGCTG TGAGACTGTAAAGTCACTTTGTTCCAATGAGGGAAAGCATGGAGGTGAAGCAACTGTTGAAGCTGTCCGGTTGATTGCTGATTCTGTTAAAAAGCAAAAA TGCCAAATGCATCCTGATTCTATTGAGGTATTCATGTCATTGAAATTTGACGAAGATCTCGTGAAGCCTAAAGAAAGGGAAAGCAAAGCTCAATACAAGA AGAACAAGAAGAGAAAGAATGCTGAAGAGCCAACCCAAGTGCAACAATCTGACAGGAAAAGAAGTAAAAAAGAAATGATGACAAAGATGAGAGAAGAGGT CGCGGCAGATTACAAGGCTGCAGCCTTCACACCAGATGTTACCGAGAAGATAAAAATGCAGACCGAGATGCTGTCTGCTGTCTTCGAGACGTATTTTCGT GTACTGAAGGATACGATAAAGTCAACTACAAGCAGTTCTGAAGCAAATGGAAAGTCTGTCAGTATATCACACCCGCTGCTTGCTCCTTCTCTAAACGGAT TGGGAAAGTTCTCTCACCTACTTGATCTAGATTACATTGCAGACCTCATGAATGACTTGAAAAGGCTTGCTGGTGCTGGTACTAGTTTGGAGAAGCCGTC TGATAAGCCCGTAAATGGATTGAATTTATCTGAACGCCTTCGATGCTGCATAGTTGCGTTCAGAGTCATGAGGATCAACCTTGATGCTCTGAATGTAGAT TTACAAGGCTTCTTCATCCAGCTGTATAATCTTATACTCGAGTACAGACCCGGAAGAGATCAGGGTGAGGTGTTAGCTGACGCATTGAAGATTATGCTCT GTGATGATAGACATCATGATATGCAGAAGGCTGCTGCATTCGCAAAACGTCTTGCCACGTTCTCGCTCTGCGTTGGACCAGCCGAGTCAATGGCCGCACT GGTGACTGTGAGACATCTACTCTTGAAGAATGTAAAGTGTCGTAACTTGTTGGAAAACGATGCCGGTGGAGGGTCAGTCTCCGGCATGATCGCGAGATAC CATCCGTACGCTTCGGATCCCAACTTAAGCGGCGCACTTGCTTCGGTACTGTGGGAGCTCAACCTCGCCTCGTTACATTACAACCCGGCAATCTCGGCCG CTGCCTCGGGGATCGCAACTATGAGCGCCGCTCCTGGCCAAGCGTACCTCACCGTCAATTCTCCACAGCAGGCGTTCAAAGATCTGTCGCTCGAGAAGGA ATCGTTCAGCCTGCCGATCAATGCTGGAAAGCCAAGCAGCAAGAAGAACAAACCCAACAAAGGGGCGGTTCCCAGTAGCTTAGAAATGGATGCCGGAACA TTGGACGAAGAAGAGTTGAAGAGGAAATTCTCTGAGCATTTCAGAGTGCTTGAAGAACTGAAGGAGAATGAGAGAGCAAGGAAGGAGCTAGCTCGTACTA GTCTTGATCTACAATTGTACCAGGAGTATAAGCTGCAGAAGAAGAAGAAAGTAAGAAAGGCAAGCAATTGA
AA sequence Show only first row Show all	>Lus10029032 pacid=23151728 polypeptide=Lus10029032 locus=Lus10029032.g ID=Lus10029032.BGIv1.0 annot-version=v1.0 MAVLVYCLATSDVASSNIIIRDDLKNVIKEGSPAIAVSCSPPAGVPPQLSELGFTVVAVCGFSSIWCISSSWSHSRRFPVAPFIQLVRMGRKKQQKKTVL PPALPPEVPEDEIEVSDEDLEFVTKNQDFAGFLTKLDTRSIDKHVNRVTDAKGKKVEDDALEALYEERLCKRSIEDEKKEKKVEVDPVHELPVKTLDGQL YYVKKSEDKRTEDVEDGDDQKDIGMVRLTKAEKRAKFKKARKEAKKLADFSTDAEETVDEEAPQAAALAEIKKDLTAEEIFESKKQKLAELGLALQADPE ENIKSLKELLQLCRDYDPNIVKLSVLSLLAVFKSIIPGYRIRLPTDKELEMKVSKEVKKTRLYESTLLSTYKAYLQRLVVLQKDSKFQHVAVRCLCTMLD AAPHFNFWEGLLTAVVANIGSPDDVIRFHLVVYLFWFCCFLKIVAYGIVFRVSIHPFFLPLDRKLSCETVKSLCSNEGKHGGEATVEAVRLIADSVKKQK CQMHPDSIEVFMSLKFDEDLVKPKERESKAQYKKNKKRKNAEEPTQVQQSDRKRSKKEMMTKMREEVAADYKAAAFTPDVTEKIKMQTEMLSAVFETYFR VLKDTIKSTTSSSEANGKSVSISHPLLAPSLNGLGKFSHLLDLDYIADLMNDLKRLAGAGTSLEKPSDKPVNGLNLSERLRCCIVAFRVMRINLDALNVD LQGFFIQLYNLILEYRPGRDQGEVLADALKIMLCDDRHHDMQKAAAFAKRLATFSLCVGPAESMAALVTVRHLLLKNVKCRNLLENDAGGGSVSGMIARY HPYASDPNLSGALASVLWELNLASLHYNPAISAAASGIATMSAAPGQAYLTVNSPQQAFKDLSLEKESFSLPINAGKPSSKKNKPNKGAVPSSLEMDAGT LDEEELKRKFSEHFRVLEELKENERARKELARTSLDLQLYQEYKLQKKKKVRKASN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79150			binding (.1)		Lus10029032 [exp]	0	1
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	1.0	0.9625
AT1G64260			MuDR family transposase (.1)		Lus10010073 [exp]	4.0	0.9345
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	5.1	0.9420
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	9.6	0.9401
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10029806 [exp]	9.6	0.9187
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	9.9	0.9330
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10029910 [exp]	10.7	0.9154
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	11.5	0.9327
AT2G34357			ARM repeat superfamily protein...		Lus10021944 [exp]	12.2	0.9330
AT2G41620			Nucleoporin interacting compon...		Lus10029548 [exp]	12.4	0.9286

Compare expression of checked genes

Lus10029032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.