Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 639 / 0 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G02780 241 / 2e-68 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 212 / 8e-58 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G16740 115 / 1e-26 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 113 / 6e-26 AtTPS02 terpene synthase 02 (.1) AT4G15870 105 / 2e-23 ATTS1 terpene synthase 1 (.1) AT1G70080 100 / 8e-22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25810 100 / 1e-21 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 99 / 3e-21 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 99 / 3e-21 AtTPS10 terpene synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012880 [exp] 897 / 0 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014673 [exp] 882 / 0 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 802 / 0 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 766 / 0 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 750 / 0 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006923 [exp] 747 / 0 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 676 / 0 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 639 / 0 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 491 / 4e-161 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082700 [exp] 736 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 730 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 258 / 5e-74 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.002G052100 [exp] 235 / 7e-66 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 221 / 4e-61 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.015G085500 [exp] 158 / 6e-41 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 155 / 8e-40 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 145 / 1e-36 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.017G041700 [exp] 138 / 5e-34 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.011G031800 [exp] 137 / 1e-33 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10029033 pacid=23151765 polypeptide=Lus10029033 locus=Lus10029033.g ID=Lus10029033.BGIv1.0 annot-version=v1.0 ATGGCGTCGTTTAGGGATTCAGAATACGAAGGGCAGGGAAATAACAGGGGAAAGGAAAATAGTAAGTTTGGCCCAATTTCCCAGGAGCCACCCCTCTACC AGCATCAGCACCACCAGAGCAGCGACGAAACCAGAGACAAAGTTAGGAAACTATTCGTTAGCACCGAACTTTCGGTGTCTGCATACGACACCGCATGGGT AGCTATGGTTCCATCACCTGGATCTGGATCTGTAATGATGCCTTGTTTTCCAGAGTGTGTGAATTGGATACTTGAAAATCAACAGAAGAATGGTTCATGG GGTCTAAGCTTCACTGATCAAGATCGGTCAAGTAATTTGCTAGTGAAAGACACTCTTTCGTCCACTTTGGCTTGTGTTCTTGCTCTCAAGCGTTGGGGCA TCGGAAACCAACAAATCGACAATGGCCTTGAATTTATGGAGCGGAATTTGGGCTTTCTCATGGAGCCAGCCCAACAAACCCCGATCGGATTCGACGTAAT TTTTCCCGCCATGATAGAAACCTCCGTAAAGGACTTCAATTTGAATCTCCCGCTAAAATCCGCCGACATCGACGCCATGATCGGAAACAGAGAATCCATA CTCAACAACTCAGGGAAGCCAAGCACGAGAGGACGAAATGCCTACTTGGCCTACATCTCTGAAGGAATCGGCGATCTACTAGACTGGGAAACCGCCATGA AATTCCAGAGGAAGAACGGCTCCCTCTTCAACTCTCCTTCTGCCACCGCAGCCGCTCTCATTCACCTTCGCGACGACGCGGGTTCACTTCGCTACCTCCG ATCAGTCGTCAACGTCACCTCTGGGAAGAATTTAGCAGTGCCAGCAATTTATCCCAACGGAACTCATGCTCGGCTCTCCCTGATTGATGCCATTGATAAT CTTGGAATCAGTCTCTATTTTCGGGAGGAGATCAAGGTGGCATTAGACGACATTTACAGAATTTGGGAGGAGGGAGACGAAGAGATATTCCTTGACTGCA CAGCTTGCGCCATGGCTTTTCGAATACTGCGACTGAATGGATATCCCGTCTCTCCAGGCAAATTCCTTGCTTTCATTCAGCTACTAACTATAGAAGGGTA TTTGAAAGATGAGAGAGCAGTGTTGGAATTACACAAAGCCTCAGAGGTCATGTACCCGGAAGAATCAATTCTGGAACACCAACACTGCTGGACAACTCGA TCTTTGACGAATTCGCTCCAAGATTCGTTGCATAGTAAACCGATTTCCACACAGGTGCATGATGTGCTCAATTATCCATCCAAGAGGGACCTGGAGCGTC TAAAGCACAAACGAAACATCGAGCACGAGCAGCTTCGTGTTGATAACAACACCAGGACGCTGAAATCCTCCTTCAGGTGTCCAAGCTTTGGAAACCAAGA TATGTTGAAACTAGCTGTTGAAAACTTCAATTTCTGCCAATCCTTGCACCAAAAGGAACTAGCCCATGTTATGAGGTGGCTGAAAGAATACAAACTGGAC GAGATGAGGCTAGCCAAGGGGAAGATGGCATATTGTTTCTTCTCGGTGGCAGCGACTTCATTCGATCCTAAGCTGTCCCACGCCCGTATCTCCTGGGCCA AACACAGTCTTCTTACTGCTCTCATCGATGAAATTTACGACATGTATGGAACTCCAGAGGAACAGCTTAACCTTGTTCATCTTCTGGAGAGATGGGATGT GGCTGGCCCTAAGGTAGATTTCTGTTCAGAGCGAGTAGAAAGCATATATCGGGCACTTCACAACGCCATTTGCGAGACTGCGGAGAATGCATTCGCCTTG CAGGGTCACAATGCTATGGATCACATCGTGGAAATCTGGTTAGATTTGCTGAGATCAGAACTGCGAGAATCTGAATGGTCAAGAACTAACACACAGCCAA CACTTGACGAGTACTTGAACAGCTCAAAGGTATCATTTGCTTTAGGACCAATTGTCCTGCCAACCCTTTACTTACTAGGACCTATGCTGTCCGATGAAGT TGCAAAGGGTCCAGAAGTCCGAAACCTGTTCGAAGTTCTCAGTACCTGCGGGCGATTGTTTAATGATCGAAGATGCAAAGATAGAGATGCTGAGCAAGGG AACTGGAACGCAGTTTCATTGCTGATGAGTCAGGGGAACTTAACTGCAGAAGAAAGTGATGAAGAAATCAAAGGGAGAGCTGAAGATCTGAGGAAACAAC TGTTGAAATTGGTGTTGGATGAACACCAGAGTAGTACAGTTCCAAAGGAATGCATGGAATTGTTCTACAAAATGAGCGATGTGCTGCACTATGCTTACAA GAAGGAAGATGGATTTGGGGCAGTTCTATTAGGCCCAGACTTGGAGTCTTTGATTGAGAAGCCCATCACACTTGCTCATCAGTGA
AA sequence Show only first row Show all	>Lus10029033 pacid=23151765 polypeptide=Lus10029033 locus=Lus10029033.g ID=Lus10029033.BGIv1.0 annot-version=v1.0 MASFRDSEYEGQGNNRGKENSKFGPISQEPPLYQHQHHQSSDETRDKVRKLFVSTELSVSAYDTAWVAMVPSPGSGSVMMPCFPECVNWILENQQKNGSW GLSFTDQDRSSNLLVKDTLSSTLACVLALKRWGIGNQQIDNGLEFMERNLGFLMEPAQQTPIGFDVIFPAMIETSVKDFNLNLPLKSADIDAMIGNRESI LNNSGKPSTRGRNAYLAYISEGIGDLLDWETAMKFQRKNGSLFNSPSATAAALIHLRDDAGSLRYLRSVVNVTSGKNLAVPAIYPNGTHARLSLIDAIDN LGISLYFREEIKVALDDIYRIWEEGDEEIFLDCTACAMAFRILRLNGYPVSPGKFLAFIQLLTIEGYLKDERAVLELHKASEVMYPEESILEHQHCWTTR SLTNSLQDSLHSKPISTQVHDVLNYPSKRDLERLKHKRNIEHEQLRVDNNTRTLKSSFRCPSFGNQDMLKLAVENFNFCQSLHQKELAHVMRWLKEYKLD EMRLAKGKMAYCFFSVAATSFDPKLSHARISWAKHSLLTALIDEIYDMYGTPEEQLNLVHLLERWDVAGPKVDFCSERVESIYRALHNAICETAENAFAL QGHNAMDHIVEIWLDLLRSELRESEWSRTNTQPTLDEYLNSSKVSFALGPIVLPTLYLLGPMLSDEVAKGPEVRNLFEVLSTCGRLFNDRRCKDRDAEQG NWNAVSLLMSQGNLTAEESDEEIKGRAEDLRKQLLKLVLDEHQSSTVPKECMELFYKMSDVLHYAYKKEDGFGAVLLGPDLESLIEKPITLAHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	0	1
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10041190 [exp]	2.4	0.9058
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10027819 [exp]	3.5	0.9012
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10041064 [exp]	4.0	0.9176
AT1G62975	bHLH	bHLH125	basic helix-loop-helix (bHLH) ...		Lus10006707 [exp]	5.1	0.8630
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10017436 [exp]	13.4	0.8818
AT3G59850			Pectin lyase-like superfamily ...		Lus10002125 [exp]	14.1	0.8318
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	14.4	0.8829
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	14.6	0.9136
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	15.0	0.8582
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	18.6	0.8978

Compare expression of checked genes

Lus10029033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.