Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26210 377 / 1e-125 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT1G13110 370 / 3e-123 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G26280 362 / 5e-120 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT3G26330 354 / 7e-117 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 351 / 8e-116 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G25120 350 / 1e-115 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25140 349 / 4e-115 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25130 349 / 4e-115 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT3G26310 349 / 7e-115 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26270 347 / 6e-114 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034230 [exp] 852 / 0 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 540 / 0 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10017676 [exp] 475 / 6e-164 AT3G26300 367 / 3e-122 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10009903 [exp] 470 / 5e-162 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10033633 [exp] 469 / 2e-161 AT3G26330 362 / 4e-120 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10012767 [exp] 461 / 1e-158 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10017677 [exp] 457 / 1e-156 AT3G26300 353 / 2e-116 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10024331 [exp] 457 / 1e-156 AT5G25180 378 / 4e-126 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10033634 [exp] 454 / 2e-155 AT5G25180 363 / 1e-120 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365100 [exp] 494 / 8e-172 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 494 / 2e-171 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 481 / 2e-166 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.007G074900 [exp] 479 / 2e-165 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 474 / 2e-163 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 473 / 3e-163 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 466 / 2e-160 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 464 / 8e-160 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 464 / 9e-160 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 436 / 1e-149 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10029035 pacid=23151777 polypeptide=Lus10029035 locus=Lus10029035.g ID=Lus10029035.BGIv1.0 annot-version=v1.0 ATGGATCCCATAACACTCTTGATCTCGATCCTAACCCTCTCCATCTTCACAATCCTAATCAAACTCCAAACCAACCCGAAACCAAACTCCCCAAACCCAC CTCCGCCGCCGCCGGGGCCATGGAAGTTACCCATCATAGGACACATCCACCACTTAGCCGCTGGCGACGGGAAAACTCTGCCCCACCGCCGCCTCCGCGA CCTATCCGAAACCCACGGCCCCGTAATGCTCCTCCAGCTCGGAGAAATCAGCCACGTTGTCATCTCCTCCCCGGAAGCGGCGAGGGAGGTGTTCAAAACT CACGACGCCGTCTTCTCCCAGCGCCCCTTCAACCTCGCCGCCAAAATCATCACCTACGACCGCTCCGACCTCGCCCACGCCGCCTACGGCGACTTCTGGC GCCAGATCCGCAAGCTCTGCACCATGGAGCTCCTTAGTCCGAAACGGGTCGGGTCGTTCCGCCCCATCCGGGAGGAGGAAGGATTGAACTTCGTCCGGCG GATCGCCGCTGCCACCACCGCGGCGCCTTCGACGCCGGTGAACTTGTCGAGGATGGTTTTTGTGCTGACTTACGGAGTGACGTCGAGGATTGCGTTTGGG CAAAGGTGTAAAGTTGAGGATGATGACGATCAGTATGTGGCGGTGGTCGAGGAGATTATGGCGGCGGCGGTTGGGTTCGGGGTGGCGGATTTGTTCCCGT CGGTGAAGTGGCTGCAGAGGATGAGTGGGATGCAGGGGAAATTGAAGAGGCTTCATGGAGTTCAGGATAAGTTGCTTGAGAGCATAATTGCAGAGCATCG AGCTAGAAGAAGAACAGGGGGAGATAAAAACAGAGGAACTGGAGATGAAGAAGAAGCGGAGGATTTGGTGGATGCTCTGTTGAATCTTCAGAGAGATAAT GGCGAAGATCATCAGCTTGGGTTTAGCTTGACTAACGACAACATCAAGGCTGTTATTGGGGATGTGTTTATTGCCGGCAGTGAAACATCGTCCACAACGG TAGAATGGGCGATTTCGAAGCTCATAAAGAACCCTGACGTGATGCGCAAGGCACAAACGGAAGTAAGGAGGGTTTTCGGGGAGAAAGGAAGAGTCGACGA AGTAGGGCTACACGAGCTGAGTTATTTGAAGCTTGTAATCAAGGAGACGCTACGGTTGCACACTCCGGCTCCTCTGCTTGTACCGAGAGAAAGCAGGGAG GAGTGCGAGGTGGATGGGTATTTGATACCCGCCAAGGCGACAGTGATGGTCAACGCGTGGGCGATCGCAAGGGATCCTAAGACGTGGGACGACCCAGAAA CGTTTCGTCCCGAGAGGTTTATGGATGGCACGATCGACTACAAAGGGACCAACTTTGAGTACCTCCCGTTCGGCGCTGGAAGGAGGATGTGTCCTGGAAT AGGGTTCGGGATAGCAAATACGGAGCTTCCACTTGCGAATTTGCTCTTCTACTTCGATTGGAAGCTCCCCGGTGATGTGAAGATGGAGAGCTTGGATATG GAGGAATCTTTTGGTGTCACTGTTAAAAGGAAACATGACCTTGAAGTTGTTCCTCTGGTTCGGTACCCACCACCGGCTATCTGA
AA sequence Show only first row Show all	>Lus10029035 pacid=23151777 polypeptide=Lus10029035 locus=Lus10029035.g ID=Lus10029035.BGIv1.0 annot-version=v1.0 MDPITLLISILTLSIFTILIKLQTNPKPNSPNPPPPPPGPWKLPIIGHIHHLAAGDGKTLPHRRLRDLSETHGPVMLLQLGEISHVVISSPEAAREVFKT HDAVFSQRPFNLAAKIITYDRSDLAHAAYGDFWRQIRKLCTMELLSPKRVGSFRPIREEEGLNFVRRIAAATTAAPSTPVNLSRMVFVLTYGVTSRIAFG QRCKVEDDDDQYVAVVEEIMAAAVGFGVADLFPSVKWLQRMSGMQGKLKRLHGVQDKLLESIIAEHRARRRTGGDKNRGTGDEEEAEDLVDALLNLQRDN GEDHQLGFSLTNDNIKAVIGDVFIAGSETSSTTVEWAISKLIKNPDVMRKAQTEVRRVFGEKGRVDEVGLHELSYLKLVIKETLRLHTPAPLLVPRESRE ECEVDGYLIPAKATVMVNAWAIARDPKTWDDPETFRPERFMDGTIDYKGTNFEYLPFGAGRRMCPGIGFGIANTELPLANLLFYFDWKLPGDVKMESLDM EESFGVTVKRKHDLEVVPLVRYPPPAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10029035 [exp]	0	1
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	2.4	0.9899
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	3.2	0.9902
AT1G80450			VQ motif-containing protein (....		Lus10026247 [exp]	4.0	0.9879
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10034230 [exp]	4.0	0.9914
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	5.1	0.9869
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	6.6	0.9898
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	8.4	0.9872
AT3G62650			unknown protein		Lus10017613 [exp]	9.3	0.9849
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041830 [exp]	10.4	0.9871
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	11.3	0.9837

Compare expression of checked genes

Lus10029035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.