Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 197 / 6e-57 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 87 / 1e-18 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 82 / 6e-17 AtTPS02 terpene synthase 02 (.1) AT1G61120 82 / 7e-17 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT2G24210 79 / 6e-16 AtTPS10 terpene synthase 10 (.1) AT3G25810 77 / 2e-15 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25820 73 / 5e-14 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25830 73 / 5e-14 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT5G48110 71 / 4e-13 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 71 / 4e-13 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034229 [exp] 447 / 4e-152 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 317 / 2e-100 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 257 / 7e-79 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 231 / 4e-69 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014673 [exp] 219 / 5e-65 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006923 [exp] 214 / 4e-64 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 210 / 9e-62 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 205 / 1e-59 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 204 / 2e-59 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082700 [exp] 197 / 7e-57 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 195 / 3e-56 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 119 / 2e-29 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.007G118600 [exp] 94 / 1e-20 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.011G032300 [exp] 87 / 1e-18 AT1G61680 350 / 1e-115 terpene synthase 14 (.1.2) Potri.019G016900 [exp] 85 / 6e-18 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G023020 [exp] 84 / 9e-18 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 84 / 1e-17 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.011G142800 [exp] 84 / 1e-17 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.019G023006 [exp] 84 / 2e-17 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10029036 pacid=23151715 polypeptide=Lus10029036 locus=Lus10029036.g ID=Lus10029036.BGIv1.0 annot-version=v1.0 ATGATTCAAACCTCCGTGAAGGACTTCAATTTGAATCTCCCGCTAAAATCAGCCAACATCGACGCCATGATCCGCAACAGAGAATCCATACTCAGCTACT CCTGCAATAATGCAGAAGGAAGAAATGCCTACTTGGCCTACGTCTCTGAAGGAATCGGAGATCTACAAGACTCGGGAACCGCCTTGAAATTCCAGAGGAA CAACGGCTCCCTCTTCAACTCTCCTTCCGCCACTGCCGCCGCCTTCATCCACCTCCAGGACCCCGATTCCCTCCGCTACCTCCGATCCGTCCTCGACGTC AATTCCGCAGAACAGTTCTTGACACAAGATAATAATACTAGGGTTCGTAAATCCTCCGTCAGCTGCCTGAACTCGTTGAGCAAAGATATGGCGAAACTCG CAGTAGGCGACTTCAACTCTCTTCAGTCCTCATACCGCTACGAACTGCAACATCTGATGCTGTGGCTTGAAGAGAAAGGGCTCGATGAGATGAGGCTAGC GAAGGTGAGAATGGAGTATTGCTACTTCAGTGCTGCTGCAACTTTCTCCAATCCAGATCACTCCGATGCACGAATTCTATTCTCCAAGCACGCCCTTCTC GTCTCTGTCGTCGATGACTTGTTCGACATGTTTGGAACGTACGAGGAGCTTCTGAACATCGTAGACCTCTTCGAGAAGTCGGATGTGAATCCACCAAGGG AAGGACAGTTTAGTTCGGAGCTGGTGAAGACACTGTACTGGGCGATCCACAGCACGGTTTGCGAGAATGTCGAGAAAGCGTTCGCGTTCCAAGGCCGAAG CATCATGGATCATCTCGTCGAACTCTGGGTGGAGATGCTTCAAGGAATGCTGAAAGAAGCAGAGTGGTCGAAATCAAACATAATGCCACCGCTTGAAGAG TACTCCACAAATGCAACCATTACACTTGGTGTAGGTGCATTCCTGGTCCCGGCTCTCTACCTGGCCGGCCACGAGCTTCCTGACCGATTCATCAAGGGTC CGAAGTTCGAAAGCTGTTCGTATCGACTAGCAATTGTGGCCGGTTGCTGA
AA sequence Show only first row Show all	>Lus10029036 pacid=23151715 polypeptide=Lus10029036 locus=Lus10029036.g ID=Lus10029036.BGIv1.0 annot-version=v1.0 MIQTSVKDFNLNLPLKSANIDAMIRNRESILSYSCNNAEGRNAYLAYVSEGIGDLQDSGTALKFQRNNGSLFNSPSATAAAFIHLQDPDSLRYLRSVLDV NSAEQFLTQDNNTRVRKSSVSCLNSLSKDMAKLAVGDFNSLQSSYRYELQHLMLWLEEKGLDEMRLAKVRMEYCYFSAAATFSNPDHSDARILFSKHALL VSVVDDLFDMFGTYEELLNIVDLFEKSDVNPPREGQFSSELVKTLYWAIHSTVCENVEKAFAFQGRSIMDHLVELWVEMLQGMLKEAEWSKSNIMPPLEE YSTNATITLGVGAFLVPALYLAGHELPDRFIKGPKFESCSYRLAIVAGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029036 [exp]	0	1
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10014874 [exp]	12.5	0.8257
AT2G40070			unknown protein		Lus10008717 [exp]	12.6	0.9089
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10037113 [exp]	17.8	0.9089
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10043149 [exp]	21.8	0.9089
					Lus10042706 [exp]	25.2	0.9089
					Lus10010414 [exp]	28.2	0.9089
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	30.9	0.9089
					Lus10010663 [exp]	33.4	0.9089
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	35.7	0.9089
					Lus10025056 [exp]	37.8	0.9089

Compare expression of checked genes

Lus10029036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.