Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01880 137 / 6e-42 RING/U-box superfamily protein (.1) AT3G10910 135 / 1e-40 RING/U-box superfamily protein (.1) AT5G05280 129 / 2e-38 RING/U-box superfamily protein (.1) AT1G49230 126 / 9e-37 RING/U-box superfamily protein (.1) AT1G49220 105 / 2e-28 RING/U-box superfamily protein (.1) AT1G49210 103 / 1e-27 RING/U-box superfamily protein (.1) AT1G49200 102 / 2e-27 RING/U-box superfamily protein (.1) AT3G18773 100 / 1e-26 RING/U-box superfamily protein (.1) AT2G17450 95 / 1e-24 RHA3A RING-H2 finger A3A (.1) AT1G76410 94 / 2e-24 ATL8 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022743 [exp] 140 / 2e-42 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10006788 [exp] 130 / 3e-38 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005814 [exp] 127 / 6e-37 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10006787 [exp] 125 / 3e-36 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10025146 [exp] 122 / 1e-35 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1) Lus10033515 [exp] 122 / 6e-35 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10005817 [exp] 121 / 2e-34 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10006785 [exp] 119 / 1e-33 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10006786 [exp] 118 / 1e-33 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G091300 [exp] 178 / 2e-57 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 175 / 4e-56 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 159 / 9e-50 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 137 / 2e-41 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 135 / 8e-41 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 131 / 1e-38 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 127 / 6e-37 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 120 / 2e-34 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 114 / 2e-32 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 112 / 1e-31 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029037 pacid=23151758 polypeptide=Lus10029037 locus=Lus10029037.g ID=Lus10029037.BGIv1.0 annot-version=v1.0 ATGGAGATTGGTAGCCTCCACCGCCGCCTTCTCGAAATCCAAACGACAATTGGCTCGCCGCCGTCTGCCTCCAGGGACGCGAATTTCGATGCGAACATGG TGATCATCCTGGCGGCGCTGCTATGCGCTCTGATCTGCGCGCTGGGTCTCAACTCGATCGTTAGGTGCGCGCTCCGATGTAGCAGGAGGTTGGCCTTCGA GGATCACGGCGGCGCACGGATGGCGGCGGCGGAAACGACGGCGGGGCTGAAGAAGAACGCTTTGCGGAAGATTCCGGTGGTGGTTTATGGATCGGCGGCG GAAGGGTTACGGATCGCGGCGACGGATTGTGCGATCTGCTTGGGGGAGTTTGTCGACGGGGAGAAAGTTAGGGTCTTGCCGAAGTGTAACCACGGGTTCC ATGTTCGGTGTGTTGATGCTTGGTTGGTTTCTCATTCTTCTTGCCCGACTTGTCGCTTTTTTTCCGTCTTGCCGGAGGACGTTGCTGGAGGCGCCGGCGG CGGTGTTGGTGGACGGTGA
AA sequence Show only first row Show all	>Lus10029037 pacid=23151758 polypeptide=Lus10029037 locus=Lus10029037.g ID=Lus10029037.BGIv1.0 annot-version=v1.0 MEIGSLHRRLLEIQTTIGSPPSASRDANFDANMVIILAALLCALICALGLNSIVRCALRCSRRLAFEDHGGARMAAAETTAGLKKNALRKIPVVVYGSAA EGLRIAATDCAICLGEFVDGEKVRVLPKCNHGFHVRCVDAWLVSHSSCPTCRFFSVLPEDVAGGAGGGVGGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10910			RING/U-box superfamily protein...		Lus10029037 [exp]	0	1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	2.0	0.9433
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	2.2	0.9494
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Lus10039511 [exp]	2.8	0.9364
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	3.0	0.9372
AT5G05280			RING/U-box superfamily protein...		Lus10034228 [exp]	3.5	0.9274
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10002428 [exp]	3.7	0.9251
					Lus10020401 [exp]	3.9	0.9358
AT3G43660			Vacuolar iron transporter (VIT...		Lus10018150 [exp]	5.7	0.8997
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10024069 [exp]	7.7	0.9054
AT1G09812			unknown protein		Lus10035787 [exp]	11.0	0.9077

Compare expression of checked genes

Lus10029037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.