Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40600 260 / 2e-88 appr-1-p processing enzyme family protein (.1) AT1G69340 63 / 1e-11 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034226 [exp] 326 / 3e-115 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Lus10034225 [exp] 266 / 9e-92 AT2G40600 286 / 1e-98 appr-1-p processing enzyme family protein (.1) Lus10029040 [exp] 139 / 4e-42 AT2G40600 184 / 2e-59 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 60 / 2e-10 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 60 / 2e-10 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10030413 [exp] 59 / 3e-10 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092700 [exp] 259 / 2e-88 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Potri.010G161500 [exp] 60 / 2e-10 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 59 / 3e-10 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0223 [flax] [poplar] MACRO PF01661 [flax] [poplar] Macro Macro domain
Representative CDS sequence Show only first row Show all	>Lus10029039 pacid=23151868 polypeptide=Lus10029039 locus=Lus10029039.g ID=Lus10029039.BGIv1.0 annot-version=v1.0 ATGACGTCCTCCGGAGCAGCTGGAGAAGACGACTCCTCATCCACTGCCGCTTTCCCAATGTCTGGTTCCAGTTTTCTCAAGATCAACAAAGGCGACATCA CTCAGTGGTTCATCGATGGCTCCTCCGATGCAATTGTTAATCCAGCTAACGGGAGGATGCTTGGTGGTGGAGGTGCTGATGGAGCTATTCATAGAGCTGC TGGGCCAGAACTGAGGGAAGCTTGCTTCAAGGTCCCTGAACTGAGGCCTGGCCTCCGCTGCCCAACTGGACAAGCTAGAATTACTCCAGGATTCAAGTTG CCAGCTTCCCATGTCATTCACACGGTTGGACCGATCTACGACACTGATCCCAACCCTCAAGCATCCCTAAAGAATGCGTACAAGAACAGCTTGAGTGTTG CAAGAGATAGCAACATCAAGTACGTGGCTTTCCCAGCTATATCTTGTGGCATTTACGGGTATCCTTTTGAAGAAGCTGCCGGTGTGGCTATATCGACGAT CAAAGAGTTTGCACATGACTTCAAAGAGGTGCATTTTGTTCTGTTTTCGGATGACGTATACGATGTTTGGGCGAAGAAGGCAAAGGAGTTGCTCCAAGAA TAA
AA sequence Show only first row Show all	>Lus10029039 pacid=23151868 polypeptide=Lus10029039 locus=Lus10029039.g ID=Lus10029039.BGIv1.0 annot-version=v1.0 MTSSGAAGEDDSSSTAAFPMSGSSFLKINKGDITQWFIDGSSDAIVNPANGRMLGGGGADGAIHRAAGPELREACFKVPELRPGLRCPTGQARITPGFKL PASHVIHTVGPIYDTDPNPQASLKNAYKNSLSVARDSNIKYVAFPAISCGIYGYPFEEAAGVAISTIKEFAHDFKEVHFVLFSDDVYDVWAKKAKELLQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40600			appr-1-p processing enzyme fam...		Lus10029039 [exp]	0	1
AT2G40600			appr-1-p processing enzyme fam...		Lus10034226 [exp]	6.6	0.8366
AT4G39230			NmrA-like negative transcripti...		Lus10023557 [exp]	8.1	0.8515
AT2G45910			U-box domain-containing protei...		Lus10036359 [exp]	8.8	0.8162
AT2G04900			unknown protein		Lus10001166 [exp]	10.7	0.8362
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004382 [exp]	24.2	0.8495
AT4G17010			unknown protein		Lus10006582 [exp]	24.8	0.7964
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023016 [exp]	26.5	0.8042
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10018030 [exp]	28.6	0.8421
AT2G48030			DNAse I-like superfamily prote...		Lus10042675 [exp]	35.4	0.8302
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10041897 [exp]	41.5	0.8250

Compare expression of checked genes

Lus10029039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.