Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10915 170 / 1e-54 Reticulon family protein (.1.2.3.4.5.6) AT2G46170 95 / 2e-24 Reticulon family protein (.1.2) AT4G11220 91 / 6e-23 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT4G23630 91 / 1e-22 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT3G61560 89 / 3e-22 Reticulon family protein (.1.2) AT5G41600 86 / 4e-21 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT1G64090 86 / 7e-21 RTNLB3 Reticulan like protein B3 (.1.2) AT3G18260 83 / 4e-20 Reticulon family protein (.1) AT2G15280 82 / 9e-20 Reticulon family protein (.1.2) AT4G01230 71 / 3e-15 Reticulon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034224 [exp] 249 / 6e-85 AT3G10915 291 / 1e-100 Reticulon family protein (.1.2.3.4.5.6) Lus10024687 [exp] 93 / 9e-24 AT1G64090 227 / 2e-74 Reticulan like protein B3 (.1.2) Lus10032313 [exp] 92 / 4e-23 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10027546 [exp] 88 / 9e-22 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10027548 [exp] 88 / 1e-21 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10032451 [exp] 86 / 2e-21 AT3G18260 268 / 9e-92 Reticulon family protein (.1) Lus10014948 [exp] 86 / 4e-21 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10038833 [exp] 86 / 8e-21 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10029822 [exp] 82 / 2e-19 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057400 [exp] 201 / 5e-66 AT3G10915 260 / 6e-88 Reticulon family protein (.1.2.3.4.5.6) Potri.015G027300 [exp] 96 / 1e-24 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 94 / 5e-24 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 94 / 5e-24 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 90 / 2e-22 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.002G165400 [exp] 82 / 1e-19 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.014G091200 [exp] 81 / 6e-19 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G055600 [exp] 80 / 7e-19 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.016G110200 [exp] 79 / 9e-19 AT3G54120 193 / 1e-62 Reticulon family protein (.1) Potri.012G054100 [exp] 78 / 2e-18 AT3G18260 238 / 6e-80 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10029041 pacid=23151792 polypeptide=Lus10029041 locus=Lus10029041.g ID=Lus10029041.BGIv1.0 annot-version=v1.0 ATGGCGGAGAATTCAAGAGACGCTGAGGCAACGGTGGACGCCGATCACGATGCGAGAAATGGTGTCTCCTCAGCTTCCAATTTTTCCGGGCAACCACAAT CATTGACGGAGCTAGTCGTGTCGGAGGAGATGGTTAACAGTGTCGCTGCGTCTTTCCGGGTTAAGATCAACAACATGCTTCTCATGGCTCATGAGATCAC TCTTGGCAAAGACTTCAGGCTCTTCTTCAAGGTTGTTGTATCGTTATGGCTCTTGTCTGCAGTCGGTAGCTACTTCTCGTTCTTCACTTTAGCCTATATA GGAACGGTATTGTCGATCACGGTTCCGGCGCTGTATAGCAAGCATGAAGAGCGAGTGGATAGATGTTTCGGGATGATCCAGAAAAGGTTCAAGATAGTCG ACGAGAGTGTTGTCAGCAGAATCCCTCAGGGTTTATCAATCAAGGACAAGGATACGTAA
AA sequence Show only first row Show all	>Lus10029041 pacid=23151792 polypeptide=Lus10029041 locus=Lus10029041.g ID=Lus10029041.BGIv1.0 annot-version=v1.0 MAENSRDAEATVDADHDARNGVSSASNFSGQPQSLTELVVSEEMVNSVAASFRVKINNMLLMAHEITLGKDFRLFFKVVVSLWLLSAVGSYFSFFTLAYI GTVLSITVPALYSKHEERVDRCFGMIQKRFKIVDESVVSRIPQGLSIKDKDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10915			Reticulon family protein (.1.2...		Lus10029041 [exp]	0	1
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	2.8	0.9534
AT4G35110			Arabidopsis phospholipase-like...		Lus10026277 [exp]	5.5	0.9524
AT1G44770			unknown protein		Lus10034500 [exp]	7.1	0.9514
AT5G44250			Protein of unknown function DU...		Lus10021741 [exp]	7.5	0.9419
AT1G55160			unknown protein		Lus10011503 [exp]	12.4	0.9294
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	13.3	0.9416
AT2G41750			DTW domain-containing protein ...		Lus10012192 [exp]	13.6	0.9059
AT4G30230			unknown protein		Lus10036511 [exp]	15.7	0.9135
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	19.4	0.9443
AT3G26100			Regulator of chromosome conden...		Lus10036945 [exp]	20.4	0.9435

Compare expression of checked genes

Lus10029041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.