Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09450 421 / 6e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 208 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 174 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 174 / 4e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 171 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G02150 170 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 160 / 6e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 148 / 2e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 146 / 6e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 137 / 4e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034221 [exp] 708 / 0 AT5G09450 453 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 191 / 3e-55 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003590 [exp] 176 / 1e-49 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 175 / 2e-49 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 172 / 2e-48 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016229 [exp] 169 / 3e-48 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10001213 [exp] 169 / 3e-47 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 166 / 7e-46 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 165 / 1e-45 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048500 [exp] 533 / 0 AT5G09450 446 / 8e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 207 / 1e-61 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G120900 [exp] 196 / 1e-57 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 187 / 9e-54 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 186 / 2e-53 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G160100 [exp] 183 / 1e-52 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 175 / 1e-49 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 173 / 6e-49 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063300 [exp] 173 / 6e-49 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G194400 [exp] 171 / 5e-48 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029043 pacid=23151785 polypeptide=Lus10029043 locus=Lus10029043.g ID=Lus10029043.BGIv1.0 annot-version=v1.0 ATGCCCGCCACCTCGCTCTTCCTCGCTCTCCGTCTGAAACGGAATCTCATAACCAACGGTAGCCGGATCCCCAGTCCTCGACAGCAAGTGATTTTCGGTC GATTTTTCTCTTCAGCCGCTTCGGGAAGTCAGCATGACGTCGCCGCTGTCGACGAAGAAGAAGATTATCTCAGTTCTGGCAAGGGAAGTAATGGCGACGA CTTGAGAAGCAGGATTCTCAGGCTCAGACTACCGAAACGAAGTGCCACCAATATCATTGACAGATGGATCGGCGAGGGGAATCCTGTCACTTCCTCTGAG CTGCGAGCTATCTCTAGAGATCTCCGCAACTCTCAACGATATAAGCACGCTCTCGAGATATCGGAGTGGATGGTTTCACAAGAGGGGTACGAGGTCTTGG ACTCCGACTATGCGACACGTATTGATTTGATGACGAAAGTTTATGGTATTGGTGCTGCAGAACGCTACTTCGAGAGCTTACCACCTGCAGGGAAAACTGC CGAGACATACACTGCCCTACTTCACTCTTATGCTGGGGTGAAAATGATTGATAAGGCCGAGGAACTTTACGAAAGAATGAAGGAATCGGATTTGTGCTTT ACTGCTGTGACATACAATGAGATGATGACTCTGTATATGTCAGTTGGCAATCTGGAACAAGTTGCTTCAGTGGTTCAAGAACTCAAAGATCGGAATGTTG CTCCTGATATCTTCACTTACAATCTCTGGATAAGCTCCTGTGCTGCAAATCTCGATATTGATGAAGCTCGAAGGGTTTTGGATGAAATGAGCTCCAGTGC CAGTTGCAATGATGACTGGCTAAGATACATTAAAATTGCTGATATATACGTTACGGCAGGTCATATAGTCAACGGCGAGACCGGTGCTGTTGTCGAAGCT GACAAAGGTATTACACAACGAGAGTGGATTACGTACGACTTTCTCATCATACTGTATGCCGGGTTACAGAACAAGGAGAGAATTGATCAAATATGGAAGT CCTTGAGAATGACCAAGCAGAAAATGACGAGCAGAAACTATGTCTGTGTTCTTTCCTCGTATCTGGTTCTCGGCCATTTGAAAGAAGTGGGAGAGGTTAT AGACCAGTGGAAGCTCTCCACTGAAACCGAGTTTGATGCCTCTGCATGTAGTAGACTTCTGGATGCATTGTCTATCGATGAACTAACTGAAGTTGCTAAC AACTTCCGCTCGCTCTTGATCGAGAGGAACTGCGACCCCACCAACTCATCAGAGTAG
AA sequence Show only first row Show all	>Lus10029043 pacid=23151785 polypeptide=Lus10029043 locus=Lus10029043.g ID=Lus10029043.BGIv1.0 annot-version=v1.0 MPATSLFLALRLKRNLITNGSRIPSPRQQVIFGRFFSSAASGSQHDVAAVDEEEDYLSSGKGSNGDDLRSRILRLRLPKRSATNIIDRWIGEGNPVTSSE LRAISRDLRNSQRYKHALEISEWMVSQEGYEVLDSDYATRIDLMTKVYGIGAAERYFESLPPAGKTAETYTALLHSYAGVKMIDKAEELYERMKESDLCF TAVTYNEMMTLYMSVGNLEQVASVVQELKDRNVAPDIFTYNLWISSCAANLDIDEARRVLDEMSSSASCNDDWLRYIKIADIYVTAGHIVNGETGAVVEA DKGITQREWITYDFLIILYAGLQNKERIDQIWKSLRMTKQKMTSRNYVCVLSSYLVLGHLKEVGEVIDQWKLSTETEFDASACSRLLDALSIDELTEVAN NFRSLLIERNCDPTNSSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09450			Tetratricopeptide repeat (TPR)...		Lus10029043 [exp]	0	1
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020117 [exp]	10.0	0.8596
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10011317 [exp]	14.6	0.8668
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10006916 [exp]	32.9	0.8489
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	37.0	0.8428
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014080 [exp]	39.2	0.8324
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10022859 [exp]	40.0	0.8347
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10007989 [exp]	41.4	0.8204
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10016248 [exp]	43.1	0.8368
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034383 [exp]	47.8	0.8184
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10010551 [exp]	48.0	0.8385

Compare expression of checked genes

Lus10029043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.