Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56330 507 / 9e-179 N2,N2-dimethylguanosine tRNA methyltransferase (.1) AT3G02320 73 / 1e-13 N2,N2-dimethylguanosine tRNA methyltransferase (.1) AT5G15810 72 / 2e-13 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030535 [exp] 632 / 0 AT3G56330 548 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10012884 [exp] 500 / 7e-177 AT3G56330 431 / 4e-150 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10034220 [exp] 121 / 3e-32 AT3G56330 94 / 1e-22 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10020290 [exp] 73 / 2e-13 AT3G02320 890 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G093500 [exp] 527 / 0 AT3G56330 533 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Potri.017G099200 [exp] 79 / 2e-15 AT3G02320 918 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Potri.004G117900 [exp] 74 / 6e-14 AT3G02320 915 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02005 [flax] [poplar] TRM N2,N2-dimethylguanosine tRNA methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10029044 pacid=23151749 polypeptide=Lus10029044 locus=Lus10029044.g ID=Lus10029044.BGIv1.0 annot-version=v1.0 ATGCTAAGTCTCTTCAACAAAACCCTATCTCCTCCTTACCCCGCCGGAAACCCGAGATGGAGAGCTTCATCACCGGGTAAAGATGGGAACTTTAAGGTAA ATTGCTGCAACCCGCCGCATCGACGGCAGACAGAGAGGGGAATCGAATTTGAGACCGGAGGAGCCTTCTACCGTCATGAAAGCTCTACAGGGCGGGACCT GGGAGTGCTGGCGGCTTCTCTCTACAGGAAATCGGAAGGCGGCGGCGGCCTGCGAGTGCTGGACGCGATGTGTGGGTGCGGGATTCGGTCCTGTAGGTAC TTGATCGAGGCAGGTGCCGAGTTTGTGATGGCGAACGATGCGAACGAGGGGTACAGGGGAGTGATTGTGGGGAATCTGAAGCAGGTGGATCATGATGGTG ATGATAAGGGATTGTGGATCGTCTGTCATTCTGAAGCTACTCGGGTTTTGACGGAGTGTTACTTGCGGAGGGACTATTTTGACTTGATTGATGTCGATTC GTTCGGGAGTGATTCAATGTTTTTGAGGTCTGCAATGCTGGCATTGAGGTTTGGAGGGTTGCTTTACCTCACCAGCACCGATGGATACTCCTCTGCCGGC GGCCACCGGCCTCAGCATTCACTGGATGCATATGGAGCATACGTTCGTCCAATGCCATTCCCGAACGAAATCGGTTTGAGAGTGCTTATAGGCGGGGCAG TTAGAGAGGCGGCGGTTCTAGGCTATCACGTCACGCCTTTGTTTTCATACTACGCCTTCCACGGTCCAGTTTACCGAGTCATGCTCAGACTGAACCGAGG TAAGCTTCACGAGAATAGGGATTATGGTTTCATTGGTTACTGCAACCAATGCGGAGATTCTCAAACATTTTCATGGAAGGAGCTTGGCAAGATAGGTTGC TCTTGTTGTAGCTCAGAGCAGCCATTGGTCGTCTCTGGGCCAATGTGGATCGGACCTCTTCATAGTGCCGACTATGTAACTGAAATGTCGAATTTGGCAA CAGAACGAGGATGGATTGGAAACGGTGAAGGAGCCAACCTGGAAAAGCTTTTGAAACAGATGATTGATGAAAGCGACCCACGATTACCACCGGGGTACAT CAAACTCGACGAGATGACAAGCCGTGCGAAAATCGATTGCCCACCGTTGAAAACACTGATGAGCAACTTGCATACGGTAGGCTCAACATTTCTTTGTTGC TGCCTCATACCTGTATCTTCGGTACGAATCCATCTGCATCGAACTGAGGCTTTTAACATCTTGTTTCAGATGGGATATGCAGCTAGCAGGACGCACATTG TCTCGAATGCGATCAAAACAGACTGTCCGATGACAGACTTCATCAAGCTTGCTAAGGATCTCATGGGCATTCCTGTAATTTAG
AA sequence Show only first row Show all	>Lus10029044 pacid=23151749 polypeptide=Lus10029044 locus=Lus10029044.g ID=Lus10029044.BGIv1.0 annot-version=v1.0 MLSLFNKTLSPPYPAGNPRWRASSPGKDGNFKVNCCNPPHRRQTERGIEFETGGAFYRHESSTGRDLGVLAASLYRKSEGGGGLRVLDAMCGCGIRSCRY LIEAGAEFVMANDANEGYRGVIVGNLKQVDHDGDDKGLWIVCHSEATRVLTECYLRRDYFDLIDVDSFGSDSMFLRSAMLALRFGGLLYLTSTDGYSSAG GHRPQHSLDAYGAYVRPMPFPNEIGLRVLIGGAVREAAVLGYHVTPLFSYYAFHGPVYRVMLRLNRGKLHENRDYGFIGYCNQCGDSQTFSWKELGKIGC SCCSSEQPLVVSGPMWIGPLHSADYVTEMSNLATERGWIGNGEGANLEKLLKQMIDESDPRLPPGYIKLDEMTSRAKIDCPPLKTLMSNLHTVGSTFLCC CLIPVSSVRIHLHRTEAFNILFQMGYAASRTHIVSNAIKTDCPMTDFIKLAKDLMGIPVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10029044 [exp]	0	1
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	5.1	0.9029
AT3G18680			Amino acid kinase family prote...		Lus10020884 [exp]	11.6	0.9015
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028850 [exp]	15.5	0.8312
AT5G65820			Pentatricopeptide repeat (PPR)...		Lus10011566 [exp]	16.1	0.8437
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003577 [exp]	16.9	0.8958
AT2G21385			unknown protein		Lus10028792 [exp]	22.2	0.8752
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10022523 [exp]	24.8	0.8215
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10024430 [exp]	34.0	0.8511
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10007772 [exp]	36.4	0.8140
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	37.2	0.7619

Compare expression of checked genes

Lus10029044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.