Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56320 452 / 7e-152 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 388 / 3e-128 Nucleotidyltransferase family protein (.1.2.3.4) AT3G51620 384 / 1e-122 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G61690 324 / 7e-97 nucleotidyltransferases (.1) AT2G39740 60 / 4e-09 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT5G53770 47 / 3e-05 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034219 [exp] 1077 / 0 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10030537 [exp] 607 / 0 AT3G56320 445 / 3e-149 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10012885 [exp] 464 / 4e-157 AT3G51620 297 / 5e-93 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 356 / 2e-113 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 350 / 9e-110 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 348 / 5e-109 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 321 / 9e-102 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10042221 [exp] 320 / 7e-100 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10004018 [exp] 324 / 9e-97 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056800 [exp] 529 / 0 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.019G128800 [exp] 358 / 4e-113 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.013G154900 [exp] 354 / 1e-111 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.015G020400 [exp] 334 / 3e-100 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 328 / 2e-98 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 328 / 2e-98 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 328 / 4e-98 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 62 / 2e-11 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1) Potri.001G400800 [exp] 44 / 0.0003 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10029045 pacid=23151852 polypeptide=Lus10029045 locus=Lus10029045.g ID=Lus10029045.BGIv1.0 annot-version=v1.0 ATGGGTGGCTTACCGCTTGTATTAACATCATCACCAGCCTTTCCCTTTCCCAGACCTGAACTCATCCCATTGTCAATCGACCCTGAACTCTGGTCGATGG CTGAGCATAGAATCGACGAGATTCTATGCACTACTCAACCTGCTTTGGAATCTGAGAAGAAGAGGGAGGAGGCGATTTCATACATCATCGCCTTGATTAA AGCTCATTACACCATCGAGGTTTTTGCTTTTGGATCAGTGTCCTTGAAAACATATCTTCCACATGGAGATATTGATCTGACTCTCCTCAGCCATCGGGAC ATTGAAGATGAACTGACTAAGGGTGTTTTAGACATCCTCCTTCGTCATGAGCACGACTCCAAATTCGTCGTAGATGATATCCAATATATAGAAGCACAGG TCAAGATTATAAAATGTTCAGTGAATAGGATATCTGTGGATATTTCTTTCAATCAATTGTCCGGGCTTTCTGCCCTCTGTTTCCTGGAGCAGGTTGATCA AATTATTCGGAAAGATCATCTTTTCAAGAAGAGTATCATCTTGATCAAATCTTGGTGCTATTACGAGAGCCGAACCCTTGGTGCATACTATGGAGTGCTC TCGACATATGCTTTGGAGATATTGGTGCTGCATCTATTCAACATGTTCCATTCATCACTAATTAGTCCTTTAGTAGTCCTGTACAAATTTCTGGATTACT ATAGCTCTTTCGACTGGGACAATTATGGCGTGTGTGTGAATGGGGTTTTCGCATTATCCTCTCTTCCAGATGTTGTTGTGGAGCCACCTGCAGGATGCGA AAGTCGATTGTTGCTCGGGCCGGAGTTTCTTCGCTATTGTCAAGAAACATTTGCAGTTCCGGTTAGAGCACTTGAAGATGGGATGCAAGAATTTGGAGTT AAGAGCATCAACATAGTGGATCCTTTGAAAGAGAGTAACAACTTGGGGCGAAGTGTTAGCAGAGGAAGCTTCAAACGGATACAATTAGCGCTTCACTACG GGTGTCGGAAGCTCCGAGAAATCCTTACCGGACCTGGAGAATCTATCGGCGCAGGACTGGAGAAGTTCTTCGTCAACACAATAGGGAGGAACGGGAGAGG ACAAAGGTCGGATGCACACAATCCCGTTCCGGCATTCGGTACCGGAAGATCCGAAGCCTGTGATCTCCACGGCGACTACGCCAGGTGCCACAGCGGTCTG CTGCAGGGCCAGTGGTATCACAATTATCAGCTGCCGAATCATTTCCACCGCCTTGCTCCTTCGTCATCATCTTCTCAAAACGTGTCGAGGAATCTCAGCG ACTTCCTCGCTCGGTTCTGGCAAGAAAGGCGGAACGTTTTCTCTCAAATAGGGACGGATTCCTTCATGCAACGAGAGATGGCGCCTCTGGTTTTCCCGTG TCCGGCGAAGAAATGTGTTCCTATCACTGGCCCTAATGGTTACGCTAGGCCGAAACCGCAAGGTACCGGCACGTACATCCCGGATACGGTTAATTATGCA GAACTATGGCCCAGGATGCGCCGGAATCGAAATTCTCCGCCTCTGAGCCAACAGTCCCAGTCACCAGAAGTCATATGTCTTACTGACTTCCAGCAAGAAT CCACCACTTCTTCCACAGATATGGATGTCGATACTCCTAGCGACTCCTCATCACCGACATCGGATGCAGCTTCGGTGGTTTCCGGACTAACTGGGGAGGC AACTGAGCAGGAGAATGAGGAGAGTTATGGAGAAAGGTATGTGCGTTTTTCTAGATATTTCGATGTTCATCACGACCATTTGATTTACGAACCGGTCCGA AACCCTCTTTCGCTATTGGCAATCTCTGTAGGGAAGCAAGTGAGGAAGATTCGACTGTTTGATGAGCAGAATCCTGGAACTGAGAAGTCTGGAAGACCGT CTAGCTGTTGTTTTTATCGTTTAGTTTTCGAACATTTTCATATAAGCTAA
AA sequence Show only first row Show all	>Lus10029045 pacid=23151852 polypeptide=Lus10029045 locus=Lus10029045.g ID=Lus10029045.BGIv1.0 annot-version=v1.0 MGGLPLVLTSSPAFPFPRPELIPLSIDPELWSMAEHRIDEILCTTQPALESEKKREEAISYIIALIKAHYTIEVFAFGSVSLKTYLPHGDIDLTLLSHRD IEDELTKGVLDILLRHEHDSKFVVDDIQYIEAQVKIIKCSVNRISVDISFNQLSGLSALCFLEQVDQIIRKDHLFKKSIILIKSWCYYESRTLGAYYGVL STYALEILVLHLFNMFHSSLISPLVVLYKFLDYYSSFDWDNYGVCVNGVFALSSLPDVVVEPPAGCESRLLLGPEFLRYCQETFAVPVRALEDGMQEFGV KSINIVDPLKESNNLGRSVSRGSFKRIQLALHYGCRKLREILTGPGESIGAGLEKFFVNTIGRNGRGQRSDAHNPVPAFGTGRSEACDLHGDYARCHSGL LQGQWYHNYQLPNHFHRLAPSSSSSQNVSRNLSDFLARFWQERRNVFSQIGTDSFMQREMAPLVFPCPAKKCVPITGPNGYARPKPQGTGTYIPDTVNYA ELWPRMRRNRNSPPLSQQSQSPEVICLTDFQQESTTSSTDMDVDTPSDSSSPTSDAASVVSGLTGEATEQENEESYGERYVRFSRYFDVHHDHLIYEPVR NPLSLLAISVGKQVRKIRLFDEQNPGTEKSGRPSSCCFYRLVFEHFHIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10029045 [exp]	0	1
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	2.2	0.9483
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	3.5	0.9382
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	3.5	0.9379
AT1G63855			Putative methyltransferase fam...		Lus10028415 [exp]	4.7	0.9186
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10016999 [exp]	6.5	0.9339
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	6.6	0.9417
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	9.4	0.9317
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	11.0	0.9266
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	11.2	0.9378
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	11.8	0.9252

Compare expression of checked genes

Lus10029045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.