Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56310 650 / 0 Melibiase family protein (.1.2) AT5G08370 478 / 1e-168 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 464 / 6e-163 ATAGAL1 alpha-galactosidase 1 (.1) AT3G26380 91 / 3e-19 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034218 [exp] 874 / 0 AT3G56310 646 / 0.0 Melibiase family protein (.1.2) Lus10024401 [exp] 481 / 4e-169 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 469 / 4e-165 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 463 / 1e-162 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 461 / 2e-161 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 434 / 5e-151 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 434 / 5e-151 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 420 / 2e-145 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10017365 [exp] 364 / 2e-123 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056700 [exp] 688 / 0 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.018G152200 [exp] 488 / 8e-172 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 472 / 6e-166 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 466 / 3e-163 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.004G038100 [exp] 459 / 1e-160 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G048400 [exp] 87 / 3e-18 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.008G185300 [exp] 84 / 4e-17 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 83 / 6e-17 AT3G26380 815 / 0.0 Melibiase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10029046 pacid=23151691 polypeptide=Lus10029046 locus=Lus10029046.g ID=Lus10029046.BGIv1.0 annot-version=v1.0 ATGATGAAAACTGGAGCGATTTTCGCTCTGCTTATCACTACACTCTACTTCCCTTGTACGGTGGTGGCTTTTCGTCCTCTGTTGCAGAGATACGAAGAGG GAAACGAGTATGGCTACAGCAGAACCTTCAATGCCATCTTCGATACTTCCAAATATGGGATTTTGCAGCTCCAGAATGGCCTGGCTAGAACTCCTCCCAT GGGATGGAATAGTTGGAATTTCTTTGCTTGCAACATCAATGAAACTCTCATCAAGGAAACAGCTGATGCTCTTATCTCGACTGGCCTGGCTGAATTAGGC TATACATATGTCAATATAGATGATTGTTGGTCTTATGTAACGCGGGATGCAAAGGGTCAAATGGTACCTGATCCGAAAACTTTTAAGTCGGGGATTAAGA CTCTTGCTGATTATGTTCACTCGAAAGGCCTCAAGCTTGGTATCTATTCTGATGCTGGGGCTTTTACTTGTCAAGTTCGGCCAGGTTCGATATTCCATGA GAAAGAAGATGCAACTTCATTTGCTTCTTGGGATGTCGATTATCTGAAGTATGACAACTGTTTTAATCTCGGCATTGATCCGAAAAAAAGATACCCACCA ATGCGCGATGCTCTTAATGCAACTGGACGTTCAATTTTCTACTCGATCTGTGAATGGGGTGTGGATGACCCGGCCTTATGGGCTGGAAAAGTCGGCAACA GTTGGCGTACAACAGAAGATATCACTGATACATGGACAAGCATGACTACTATTGCTGACCTAAATGACAAGTGGGCGGCTTATGCTGGACCAGGCGGATG GAACGATCCGGACATGCTGGAAGTTGGTAATGGAGGCATGGATTACCACGAATACCGTTCCCATTTTAGCATCTGGGCTTTGATGAAGGCCCCTCTTTTG ATAGGGTGCGATGTAAGAAACATGACTTCAGAAACTAAGGAGATTCTAAGCAATGCGGAAGTCATTGCGGTGAATCAAGATCCTCTTGGGGTTCAAGGAA GAAAAGTGCATGCCAATGGAACTGATGGTTGCCAGCAGGTTTGGGCAGGCCCTTTGTCTGACCATAGCATGGCCGTTGTGCTATGGAACCGATGCTCGGA TGCCGTTGTGATAACAGCTCAATGGGATGTGATCGGGCTCGAAGCCGGCACGAGTGTCTCAGTGAGAGACCTTTGGCAGAAAAAAGTCGTGATGGACAAT GCGGTGGCCTCATTCGGTGCTCAAGTCCATGCTCATAGCTGCGAGATGTACATCTTCACTCCTCAGGTGGCCGGATCGGAAGCTATGTAG
AA sequence Show only first row Show all	>Lus10029046 pacid=23151691 polypeptide=Lus10029046 locus=Lus10029046.g ID=Lus10029046.BGIv1.0 annot-version=v1.0 MMKTGAIFALLITTLYFPCTVVAFRPLLQRYEEGNEYGYSRTFNAIFDTSKYGILQLQNGLARTPPMGWNSWNFFACNINETLIKETADALISTGLAELG YTYVNIDDCWSYVTRDAKGQMVPDPKTFKSGIKTLADYVHSKGLKLGIYSDAGAFTCQVRPGSIFHEKEDATSFASWDVDYLKYDNCFNLGIDPKKRYPP MRDALNATGRSIFYSICEWGVDDPALWAGKVGNSWRTTEDITDTWTSMTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMDYHEYRSHFSIWALMKAPLL IGCDVRNMTSETKEILSNAEVIAVNQDPLGVQGRKVHANGTDGCQQVWAGPLSDHSMAVVLWNRCSDAVVITAQWDVIGLEAGTSVSVRDLWQKKVVMDN AVASFGAQVHAHSCEMYIFTPQVAGSEAM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56310			Melibiase family protein (.1.2...		Lus10029046 [exp]	0	1
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	3.5	0.9124
AT4G15563			unknown protein		Lus10012807 [exp]	4.6	0.9060
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	9.5	0.9015
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Lus10007764 [exp]	10.4	0.8872
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	12.7	0.9102
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	12.8	0.9164
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10033463 [exp]	13.0	0.8683
AT3G18620			DHHC-type zinc finger family p...		Lus10016564 [exp]	13.6	0.8668
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	14.0	0.9079
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10033868 [exp]	16.2	0.9045

Compare expression of checked genes

Lus10029046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.