Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 94 / 3e-23 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 92 / 1e-22 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 86 / 1e-20 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G46140 86 / 5e-20 Protein kinase superfamily protein (.1) AT5G55090 84 / 2e-19 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT3G06030 83 / 7e-19 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G26890 82 / 1e-18 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT2G32510 82 / 1e-18 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT2G42550 81 / 2e-18 Protein kinase superfamily protein (.1) AT1G09000 80 / 7e-18 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034217 [exp] 194 / 4e-65 AT5G67080 60 / 2e-11 mitogen-activated protein kinase kinase kinase 19 (.1) Lus10026894 [exp] 157 / 2e-48 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 149 / 7e-47 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 150 / 2e-45 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029023 [exp] 147 / 6e-45 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034288 [exp] 142 / 4e-42 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 140 / 4e-41 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10034285 [exp] 138 / 1e-40 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10031963 [exp] 125 / 8e-38 AT3G06030 87 / 1e-21 NPK1-related protein kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131100 [exp] 95 / 8e-24 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.007G044800 [exp] 90 / 9e-22 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 87 / 8e-21 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.006G181000 [exp] 86 / 3e-20 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.002G129100 [exp] 83 / 6e-19 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.001G042400 [exp] 82 / 7e-19 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.005G139200 [exp] 81 / 1e-18 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.014G035500 [exp] 82 / 2e-18 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.003G184200 [exp] 80 / 3e-18 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.005G033400 [exp] 81 / 4e-18 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029047 pacid=23151811 polypeptide=Lus10029047 locus=Lus10029047.g ID=Lus10029047.BGIv1.0 annot-version=v1.0 ATGGAGAGCCGGGAGATACGTCCGACGGGAAGGGACTTCAGGGGAACGGTCAGATACCTTCCGCCGGAGATGATTTGGCTGGGGAAGGTGTCCCCGGCGA TGGATATATGGGCTTTGGGATGCAGTGTGATCGAGATGCTGACCGGAAACTTGCCGTGGAATGATTTGAAGGAGGAAAAAGATGTGATGAGCGTGATCGG AAAGGGAGGTCAGCCGGAGATTCCGGAGTGGGTTTCCGAAGAGGGAAAGGATTTTCTGCACAAGTGCTTTATTAGGTGTTCGCAGCAGCGTTTTCCGGCT AAATTGCTTATGCAGCACCCGTTCGTCACTGGCGGGAGGATTTCGAAGGCGGTGATCGGACCAACAGGAAGGAATCGGAGTGTTGGCAGGGAAACAATGG CGGCGCCAGAGCAGAGGTCCCCTCCTGCCGCTGCTGTTTACACTCTGTTTCCTACTCATCAAGCTGCTTTGGTCGCACTTTGA
AA sequence Show only first row Show all	>Lus10029047 pacid=23151811 polypeptide=Lus10029047 locus=Lus10029047.g ID=Lus10029047.BGIv1.0 annot-version=v1.0 MESREIRPTGRDFRGTVRYLPPEMIWLGKVSPAMDIWALGCSVIEMLTGNLPWNDLKEEKDVMSVIGKGGQPEIPEWVSEEGKDFLHKCFIRCSQQRFPA KLLMQHPFVTGGRISKAVIGPTGRNRSVGRETMAAPEQRSPPAAAVYTLFPTHQAALVAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029047 [exp]	0	1
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Lus10022314 [exp]	3.2	0.7035
					Lus10038619 [exp]	9.8	0.7342
					Lus10000169 [exp]	12.0	0.7320
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	12.1	0.7350
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10000433 [exp]	14.1	0.6853
AT2G46910			Plastid-lipid associated prote...		Lus10000058 [exp]	16.1	0.6940
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	20.1	0.6918
					Lus10040805 [exp]	43.8	0.6507
AT3G21690			MATE efflux family protein (.1...		Lus10002067 [exp]	47.6	0.6862
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022313 [exp]	52.1	0.6437

Compare expression of checked genes

Lus10029047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.