Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 446 / 2e-151 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 416 / 6e-140 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14100 401 / 3e-134 FUT8 fucosyltransferase 8 (.1) AT1G14070 399 / 1e-133 FUT7 fucosyltransferase 7 (.1) AT1G14080 398 / 5e-133 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT1G14110 386 / 4e-129 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT2G15370 380 / 7e-126 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT2G15390 371 / 1e-122 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15350 341 / 5e-112 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G74420 301 / 2e-95 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036776 [exp] 439 / 5e-148 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 437 / 1e-147 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10037152 [exp] 367 / 1e-122 AT2G03220 564 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 367 / 2e-120 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041641 [exp] 360 / 1e-117 AT1G14100 426 / 5e-144 fucosyltransferase 8 (.1) Lus10026128 [exp] 348 / 2e-113 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 318 / 4e-102 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 315 / 9e-101 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 308 / 3e-98 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191401 [exp] 458 / 3e-154 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 437 / 1e-147 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 436 / 2e-147 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 431 / 3e-145 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 417 / 2e-138 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 412 / 4e-137 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 409 / 1e-136 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10029049 pacid=23151805 polypeptide=Lus10029049 locus=Lus10029049.g ID=Lus10029049.BGIv1.0 annot-version=v1.0 ATGAAGTTCTCAAGCTTCTCTTCCGTGTCCTACACGGCTCTCCCCGTAACTCTCTTCCTTGCTCTTCTTCTCTTGTTCGGCCGCAACTCGAATTTCGATC TGTTCCAGAGTATAGCCAGCAGGAGTAGTCCAGCCAATGATTTGTTACCGAGGAATCGTTCAAGTTCAGGCTCAGTAAATCAAACAGCAGAAACAGTTCA GAATGTCACAGGATTGATTCCAGACTCAGCATCACAGGGTTCAGTGAACACTACAGCGGACTTGGAATTAGGCAGAGCTACTCAGAATGACTCGGCAGTA AATCTGAATTCAGGGTTGGATAATGAATCAGATTCTGCCGATCGGTTGCTAGGAGGCTTGCTATCTGCCGCATTCGACGAAAATTCATGCCAGAGCCGGT ACAGTTCATATCTACTTAGAAGAAAGCCTTCTCCTCATCAACCGTCTAAGCATCTGATCTCGAAACTCAGAAGCTACGAGAGACTCCATAAACGTTGCGG TCCTGGAAGCCGAAATTTTCGAAAACTGGTCAAGTCTCGTCCCATTAACCGCGTTACCGACACGAATCCATGCAAGTACATAAGTTGGATACCTGTGAAT GGATTGGGGAACATGATCATAAGCCTGACTGCAACGTTCCTCTATGCTGTCATCACCGATCGAGTTCTCCTAGTCGAATTAAACCCCGGAATGGATAACC TGTTCTGCGAGCCATTTCCGAATTCCTCGTGGATTTCCCCGCAGCATTTCCCTCACCGGAACCACGAGGCCAGCCTCCCGAATTTTGACACCCTCCTGAA GAACAAGAACAACAATTCCTCATTGCCGAAATTCCTCTATCTCAACATCGAACGGAAGCACGATAAGCCGTTCCATTGCAATTCCGGACAAGATTTGCTC GAAAAAGTGCCAGTATTGTTCATCAGGACGGATCAGTACTTCGTCCCGTCGCTTTTCATGGTAGAGAAATTCAATCCTGAGCTGATCAGAATGTTTCCAG ACAAAGGAACGGTGTTCCATCACTTGGCACGATATCTATTCCATCCATCGAATCAAGCTTGGGGATTAATTACAAGATTCTTCGATACGTACCTGGCGAA TGCAGAACAAAGAATCGGGATCCAAATTAGGGTTTTCAATTCGGACGACGTCCCTCCCCAAACTGTAATCAATCAGATCTCGGCTTGCTCCAAGAACTAC AACATCCTGCCGGAATTATCCCCAACGACGAGGAAGACGAACGGGACGGTGAAGGCGATCCTGGTGGCGTCGTTGAGCTCGATTTACGGCGACGATTTGA GGAACAAGTACTGGACGGCGGCGTCGACGGCGGAGAAGGTGGGGGTTTTCCAGGCGAGTTCAGAAGGAGTTCAGAAGTTCAAAGACGAGATGCATAATGT GAAGGCGTGGGCAGAGATGTATATGCTGAGCTTGTGCGATTCGCTGCTGACGAGCGGGCAGTCGACGTTTGGGTACGTGGCTCAGGGCTTGGGAGATGTG AAGCCGTGGATTATGGAGAAACCGCTGGATAAGAACATTCCTAATCCGCCGTGCTGGCAGGGGTTGTCGTCGGAGCCGTGCTTCCATTGGCCGCCGGAGT ATGAATGCTCCGCGGCGACGGGAAGGCGGATTGAGGGTCGGAGGTGGAATGTTAGCGAGAGTTTTGGGTACTTGAAGCCTTGTGAGGATTTGGGTTCTGG AGTGAAATTGATGCCATGA
AA sequence Show only first row Show all	>Lus10029049 pacid=23151805 polypeptide=Lus10029049 locus=Lus10029049.g ID=Lus10029049.BGIv1.0 annot-version=v1.0 MKFSSFSSVSYTALPVTLFLALLLLFGRNSNFDLFQSIASRSSPANDLLPRNRSSSGSVNQTAETVQNVTGLIPDSASQGSVNTTADLELGRATQNDSAV NLNSGLDNESDSADRLLGGLLSAAFDENSCQSRYSSYLLRRKPSPHQPSKHLISKLRSYERLHKRCGPGSRNFRKLVKSRPINRVTDTNPCKYISWIPVN GLGNMIISLTATFLYAVITDRVLLVELNPGMDNLFCEPFPNSSWISPQHFPHRNHEASLPNFDTLLKNKNNNSSLPKFLYLNIERKHDKPFHCNSGQDLL EKVPVLFIRTDQYFVPSLFMVEKFNPELIRMFPDKGTVFHHLARYLFHPSNQAWGLITRFFDTYLANAEQRIGIQIRVFNSDDVPPQTVINQISACSKNY NILPELSPTTRKTNGTVKAILVASLSSIYGDDLRNKYWTAASTAEKVGVFQASSEGVQKFKDEMHNVKAWAEMYMLSLCDSLLTSGQSTFGYVAQGLGDV KPWIMEKPLDKNIPNPPCWQGLSSEPCFHWPPEYECSAATGRRIEGRRWNVSESFGYLKPCEDLGSGVKLMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10029049 [exp]	0	1
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10035868 [exp]	3.3	0.8443
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	7.9	0.8874
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10023478 [exp]	13.0	0.8591
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	22.4	0.8609
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10013639 [exp]	24.0	0.8278
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10037203 [exp]	24.6	0.8663
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10019530 [exp]	24.7	0.8360
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10000446 [exp]	25.5	0.8593
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10020967 [exp]	26.5	0.8386
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	26.8	0.8360

Compare expression of checked genes

Lus10029049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.