Plant FIBer expression Database

Lus10029051 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56290 158 / 2e-49 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034215
[exp]
218 / 7e-66 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G056400
[exp]
178 / 2e-57 AT3G56290 204 / 7e-68 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05349 GATA-N GATA-type transcription activator, N-terminal
Representative CDS sequence
>Lus10029051 pacid=23151671 polypeptide=Lus10029051 locus=Lus10029051.g ID=Lus10029051.BGIv1.0 annot-version=v1.0
ATGATGGCAGTAATTAGAGCAACGCCTGCCACCTCCACTAGCTCATCCACACTTCCCCTGCCTCCTTCCCCTGCTTCCTCTTCGACCTCGTACTTGACCG
GCGGCGGAAATCGACGGCGGAGGCTACGGAGCTTGAGAACGGCGGCGGAAAAACCATCCGGCGTGGAGGAGGAGCCGAAGAAGACTACAAAACAATCTCT
GTTCACGTCCCTCACGGATGCGCTCGATTTCGCACAGGTTCGCTCCGAGAAGGATGCGGAGCTGCTGGAAGAGGCGAGGGAGAACACACTGTCCGGCGGC
AGGATGAGCCGGGAACAGTACGGTGCACTCAGGAGGAAGATCGGCGGCACTTACAAGGACTTCTTCAAGTCCTACGTCGAGGTTGAAGGGGACTATGTGG
AGGAAGGGTGGGTGGACAAGACATGCAAGATATGCAAGAAGGACACAAGGGGAGATGAGAGGCAGGTTGACAAGCTCGGGAGATATGTCCACGTGGCTTG
TTTGGAATCCAACGGTGGTGGAGATAACGGCGCCGGAAATTTCTTTACCAGGCTTTTCTCCAGATCGTGA
AA sequence
>Lus10029051 pacid=23151671 polypeptide=Lus10029051 locus=Lus10029051.g ID=Lus10029051.BGIv1.0 annot-version=v1.0
MMAVIRATPATSTSSSTLPLPPSPASSSTSYLTGGGNRRRRLRSLRTAAEKPSGVEEEPKKTTKQSLFTSLTDALDFAQVRSEKDAELLEEARENTLSGG
RMSREQYGALRRKIGGTYKDFFKSYVEVEGDYVEEGWVDKTCKICKKDTRGDERQVDKLGRYVHVACLESNGGGDNGAGNFFTRLFSRS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56290 unknown protein Lus10029051
[exp]
0 1
AT1G72030 Acyl-CoA N-acyltransferases (N... Lus10021995
[exp]
1.4 0.9615
AT1G79510 Uncharacterized conserved prot... Lus10001766
[exp]
3.2 0.9551
AT4G09350 NdhT, CRRJ NADH dehydrogenase-like comple... Lus10029740
[exp]
3.9 0.9516
AT1G75500 WAT1 Walls Are Thin 1 (.1.2) Lus10008894
[exp]
12.3 0.9234
AT3G02380 CO ATCOL2, COL2 CONSTANS-like 2 (.1) Lus10005106
[exp]
14.4 0.9376
AT1G72030 Acyl-CoA N-acyltransferases (N... Lus10042534
[exp]
14.5 0.9342
AT2G47490 ATNDT1 NAD+ transporter 1, ARABIDOPSI... Lus10001463
[exp]
14.6 0.9337
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Lus10040482
[exp]
16.3 0.8394
AT4G27030 FADA, FAD4 FATTY ACID DESATURASE 4, fatty... Lus10037808
[exp]
17.1 0.9316
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Lus10028619
[exp]
17.1 0.9463

Lus10029051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.