Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10940 381 / 2e-134 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) AT3G52180 141 / 3e-40 ATSEX4, SEX4, ATPTPKIS1, DSP4 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) AT3G01510 112 / 8e-28 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034214 [exp] 513 / 0 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10037924 [exp] 135 / 6e-37 AT3G52180 464 / 2e-163 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10038652 [exp] 134 / 1e-36 AT3G52180 456 / 8e-161 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10022236 [exp] 112 / 6e-28 AT3G01510 567 / 0.0 like SEX4 1 (.1) Lus10008779 [exp] 112 / 6e-28 AT3G01510 703 / 0.0 like SEX4 1 (.1) Lus10004376 [exp] 45 / 5e-05 AT2G35680 367 / 3e-127 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10040174 [exp] 44 / 7e-05 AT2G35680 369 / 5e-128 Phosphotyrosine protein phosphatases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048600 [exp] 393 / 5e-139 AT3G10940 417 / 2e-148 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Potri.008G029300 [exp] 147 / 2e-41 AT3G52180 461 / 1e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.010G232200 [exp] 143 / 3e-40 AT3G52180 459 / 5e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.001G349000 [exp] 112 / 8e-28 AT3G01510 775 / 0.0 like SEX4 1 (.1) Potri.003G080000 [exp] 46 / 1e-05 AT2G35680 385 / 3e-134 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.001G154700 [exp] 45 / 2e-05 AT2G35680 379 / 1e-131 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.010G033000 [exp] 40 / 0.0004 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10029052 pacid=23151872 polypeptide=Lus10029052 locus=Lus10029052.g ID=Lus10029052.BGIv1.0 annot-version=v1.0 ATGAAGAACCTCTCGTATTCTGGTTTCGGGTACCCGAATCCGAATGAGCTTCAGCTACAGTGGAAACCAGATTGTTGTTCCATGGTTTCTGGAAGGAAAT GGTTCAGAATCAATTGCCAGGTGTCGGGAAATGGAATCAGCAGCAGCAGAAACAACGTGTCATTGAGCTCATCAGTGAATCGAATGGAAGAATACAACAC GGCGATGAAGAGGATGATGAGGAATCCGTATGAGTATCACCATGATCTTGGTATGAATTACAAACTGATAACTGAGAATGTGATTGTGGGATCCCAGCCA CAGAAGGCAGAAGACATTGATCATTTGAGACATGAAGAGAACGTTTCCTACATTCTGAATCTGCAGCAGGACAAGGATATCGAGTTTTGGGGCATCGACT TAGAATCGATCGTGAAGAGGTGTCGAGAACTCGGAGTCCGCCATATGAGAAGGCCTGCGGTTGACTTCAATCCGGATTCGTTACGAAGCATACTGCCCAA GGCCGTGTCGTCCCTCGAATGGGCGATCTCCGATGGCAAAGGTCGAGTTTACGTTCACTGCACTGCCGGACTTGGAAGGGCACCAGCTGTCACGATCGCT TACATGTTCTGGTTTTGTGACATGAATTTGAATGCAGCATACGATGCACTGACATCGAAGAGACCCTGCGGACCGAATAAGAGATCGATAAGAGGAGCTA CGTACGATCTGGCCAAGAGCAATGGTTCGTGGAAGGAGCCGTTTGATAGTCTTCCAGAACATGCTTTTGAAGATGTCTCTGACTGGGAGAGGAAGTTGAT TCGAGATAGAGTTCGTGCTCTCCGCGGTACTTGA
AA sequence Show only first row Show all	>Lus10029052 pacid=23151872 polypeptide=Lus10029052 locus=Lus10029052.g ID=Lus10029052.BGIv1.0 annot-version=v1.0 MKNLSYSGFGYPNPNELQLQWKPDCCSMVSGRKWFRINCQVSGNGISSSRNNVSLSSSVNRMEEYNTAMKRMMRNPYEYHHDLGMNYKLITENVIVGSQP QKAEDIDHLRHEENVSYILNLQQDKDIEFWGIDLESIVKRCRELGVRHMRRPAVDFNPDSLRSILPKAVSSLEWAISDGKGRVYVHCTAGLGRAPAVTIA YMFWFCDMNLNAAYDALTSKRPCGPNKRSIRGATYDLAKSNGSWKEPFDSLPEHAFEDVSDWERKLIRDRVRALRGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10029052 [exp]	0	1
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10034214 [exp]	2.8	0.8751
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10021967 [exp]	4.9	0.8340
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10041260 [exp]	13.0	0.8116
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020415 [exp]	14.6	0.8452
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	16.7	0.8024
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	17.0	0.8405
AT4G35320			unknown protein		Lus10026561 [exp]	18.6	0.8399
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008740 [exp]	18.7	0.8246
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10017957 [exp]	19.3	0.8214
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030087 [exp]	19.6	0.8324

Compare expression of checked genes

Lus10029052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.