Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10970 525 / 0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G11570 107 / 1e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G38740 50 / 6e-07 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034213 [exp] 655 / 0 AT3G10970 537 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10002002 [exp] 104 / 1e-24 AT4G11570 491 / 9e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10035494 [exp] 103 / 3e-24 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10018906 [exp] 44 / 0.0002 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049000 [exp] 529 / 0 AT3G10970 510 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.001G104366 [exp] 112 / 1e-27 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G127100 [exp] 106 / 2e-25 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.014G043500 [exp] 50 / 2e-06 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G077200 [exp] 45 / 6e-05 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 45 / 7e-05 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10029053 pacid=23151755 polypeptide=Lus10029053 locus=Lus10029053.g ID=Lus10029053.BGIv1.0 annot-version=v1.0 ATGAATATTCACGGAAAAGTGCTCTCCTTGCTATCTGTTTCTTCAGCTGCAGGTGTAAACCCCAGAAGAAAAGTTTCAGTCTTTACCCGCAAAATTAGCA TAGAAGAGAAAATGATTAATAATTTGATGGAGTGCAGTAGTTGCAGCACCGGCCGGAATTTCACAAGCTCATCGTCGTCCTCTCTATTGCTTCCGTCGAG ACCTTCTCGTCTCCCTCGTACTCTTTCGCCTTCAAAGCTCAAATTATCCAAATCAAAGCGTCAGCAGCGTCTAATCGTCACGAAAGCTTGTGGGGACGAA GGAAATGGGTCGGGTAACGGGTTCCCTGTCCCTCCAGACAAGCTTTTCTCACAGGAGGCTATTGGAGCTGAATATGGTGAAGGTTTTGAGACATTCAGGC AGGATGGACCTTTGAAGGTTGATGTGGATTTTTTGAATGAGAGGCTGCAAGAAGGTTTCCTGAAACGGATACGCTATGCCATGAAGCCTGATGAAGCTTA TGGTCTTATCTTCTCTTGGGACAATGTTGTGGCGGATACTCGGACTATGAAGATGAAGATATGGAAGCAACTTGCTTCTGAAGAAGGAAAAGAAATACCT GAAGATGAACGTGTACAAAGACTGATGATATATGCAGGTGCTGACCATGTACTGCGTAAGGTATTATTGTGGGAGGTGACAGAAAGTGAGTTGGACAGAT TGAAGTCGAGATTATCGCAGTTATATCTCGACTATCTCGTTAAACTTAGGAAACCCATTGATGGTCTGCAAGAGTGGCTGGATGCAGTATCGAGATCTGG CATCCCTTGTGCTGTGGTTTCGAGTCTCGATCGGATCAGCATGGTAGATGTCTTGGAGCGGTTGGGGCTCAAGAAGTATTTTCAGGCAATCGTGTCTGAG GAAGATGGCATGGAGTCGATAGCACACAGATTTCTTTCTGCAGCTGTCAAGCTGGATAGAAAACCATCGAAATGCGTAGTATTCGAGGACGATCCCAGAG GGGTTACTGCTGCTCACAACTGTACTATGATGGCTGTGGCATTAATCGGAGTCCATCCTGCGTACGAGCTGGTGCAGGCGGATCTTGCAGTTGCGAGCTA CAACGAGCTTTCGGTGATCAACCTCAGGAGATTATACGCTAACAAGGGTTCGACGTTTATGGACAGGGAAAAGCAGAGGATCAAGAAATCTCCCCCGAAA CGAAAGCTAACCATTGACACCATCTACTGA
AA sequence Show only first row Show all	>Lus10029053 pacid=23151755 polypeptide=Lus10029053 locus=Lus10029053.g ID=Lus10029053.BGIv1.0 annot-version=v1.0 MNIHGKVLSLLSVSSAAGVNPRRKVSVFTRKISIEEKMINNLMECSSCSTGRNFTSSSSSSLLLPSRPSRLPRTLSPSKLKLSKSKRQQRLIVTKACGDE GNGSGNGFPVPPDKLFSQEAIGAEYGEGFETFRQDGPLKVDVDFLNERLQEGFLKRIRYAMKPDEAYGLIFSWDNVVADTRTMKMKIWKQLASEEGKEIP EDERVQRLMIYAGADHVLRKVLLWEVTESELDRLKSRLSQLYLDYLVKLRKPIDGLQEWLDAVSRSGIPCAVVSSLDRISMVDVLERLGLKKYFQAIVSE EDGMESIAHRFLSAAVKLDRKPSKCVVFEDDPRGVTAAHNCTMMAVALIGVHPAYELVQADLAVASYNELSVINLRRLYANKGSTFMDREKQRIKKSPPK RKLTIDTIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10029053 [exp]	0	1
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10009190 [exp]	2.0	0.7626
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10032655 [exp]	7.5	0.7304
AT2G14910			unknown protein		Lus10013888 [exp]	11.0	0.7589
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021349 [exp]	12.9	0.7605
AT3G57450			unknown protein		Lus10019730 [exp]	18.0	0.6851
AT1G79600			Protein kinase superfamily pro...		Lus10037291 [exp]	19.0	0.6409
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	23.4	0.7110
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	27.6	0.7013
AT1G75100		JAC1	J-domain protein required for ...		Lus10032709 [exp]	31.0	0.7257
AT5G43260			chaperone protein dnaJ-related...		Lus10015783 [exp]	36.7	0.6805

Compare expression of checked genes

Lus10029053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.