Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45820 473 / 8e-166 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 474 / 2e-165 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G07070 445 / 2e-154 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G01810 443 / 2e-154 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G18700 433 / 2e-149 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 426 / 1e-146 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 417 / 1e-142 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT1G30270 405 / 1e-138 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT2G34180 404 / 8e-138 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT5G25110 398 / 1e-135 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034212 [exp] 816 / 0 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10012893 [exp] 543 / 0 AT5G58380 446 / 3e-154 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 483 / 1e-169 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 482 / 4e-169 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 463 / 1e-161 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 455 / 2e-158 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10015275 [exp] 432 / 1e-148 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10036280 [exp] 426 / 3e-147 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 424 / 1e-146 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048800 [exp] 541 / 0 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 522 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 488 / 1e-171 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 484 / 5e-170 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 464 / 3e-162 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.011G067600 [exp] 442 / 3e-152 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 434 / 3e-149 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.006G186200 [exp] 424 / 9e-147 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 417 / 6e-144 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G062800 [exp] 407 / 1e-139 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029054 pacid=23151865 polypeptide=Lus10029054 locus=Lus10029054.g ID=Lus10029054.BGIv1.0 annot-version=v1.0 ATGGAGAACAAAGGGAGTAATGTTCTGATGGAGAGGTATGAAGTTGGAAAACTTCTAGGGCAAGGCAACTTCGCGAAAGTACACCACGCTCGAGACCTTA AATCGGGCCAAAGCGTGGCAATCAAGGTAATCGACAAGGAGAAGGCTCTGAAAGCTGGTCTAACCGACAACATCAAACGAGAAATATCTGTGATGAGGCG GGTCAAACACTCGAACGTGCTTCAACTCTACGAGGTTATGGCTTCAAAGAAAAAGATCTACTTTGTCATTGAGTATGCCAAGGGCGGCGAGCTCTTCAAC AAAGTGGCGAAAGGAAGGCTGAAGGAAGATGCTGGGAGGAAGTATTTCCGGCAGCTGATCCACGCTGTTGAGTTTTGTCATGGGAAGGGGGTTTATCACC GGGACTTAAAGCCCGAGAATTTGCTTCTTGATGGGAACGGAACACTGAAAGTGTCCGATTTCGGACTTAGTGCACTTCAAGATGACCATTCTCGAGATGG CTTGTTCCGCACGACATGTGGGACTCCGGCTTATGTGGCTCCTGAGGTTTTGTATGGTCGGGGCTACGATGGAGCGAAAGCAGATATTTGGTCTTGTGGT GTGATCTTGTATGTGATGCTGGCTGGATATCTACCGTTCCATGATGCGAATACTATCGTTATGTACCGGAAGGCGAGCAACGGTGAGTACAAGTCGCCTG CTTGGTTCGCACCCGAGGTTTGCCAATTGCTGTCGAGAATGCTTGACCCGAATCCAGTTACTCGGATCACGATATCCGAAATCATGGAGGATCCTTGGTT CACGAAAAAGGCAGAATCTTTCCAATCTGTCAAGTCATCTACTACTACAGATTCGATCGAAGAAGAATCCACGGACTTGGGGAAACCAATGAGTCTAAAC GCATTCGACATAATCTCCCACTCGGTCGGGCTGAACCTGTCCGGTTTGTTTGTGGAGAACGATCACCGCAACAAGGAATCTGTAAAGTTTGTGTCTTTGC AGTCCGCCTCAGCGATTCTGGCCAAGCTGGAGGATATCGCGACGAATCTGAAGCTACAGATTAGGAAGAGAGACAGAGGGCTTCTGGTTTTAGAGGCATT AGATGATCAAAGAAGGAGGCTTTTCGTATCGATTGATGTCGAGATATTTGAGTTCACTCCTTACTGTCATCTGGTGGAGCTGCAGAATTCCGGTGGCGGT TCGAGCAAGAAATGGCTGGTGATGGAGCAGCAGTTGAGAGAAGATCTCAAGGACATTGTTTGGGCTTGGAATGAATGA
AA sequence Show only first row Show all	>Lus10029054 pacid=23151865 polypeptide=Lus10029054 locus=Lus10029054.g ID=Lus10029054.BGIv1.0 annot-version=v1.0 MENKGSNVLMERYEVGKLLGQGNFAKVHHARDLKSGQSVAIKVIDKEKALKAGLTDNIKREISVMRRVKHSNVLQLYEVMASKKKIYFVIEYAKGGELFN KVAKGRLKEDAGRKYFRQLIHAVEFCHGKGVYHRDLKPENLLLDGNGTLKVSDFGLSALQDDHSRDGLFRTTCGTPAYVAPEVLYGRGYDGAKADIWSCG VILYVMLAGYLPFHDANTIVMYRKASNGEYKSPAWFAPEVCQLLSRMLDPNPVTRITISEIMEDPWFTKKAESFQSVKSSTTTDSIEEESTDLGKPMSLN AFDIISHSVGLNLSGLFVENDHRNKESVKFVSLQSASAILAKLEDIATNLKLQIRKRDRGLLVLEALDDQRRRLFVSIDVEIFEFTPYCHLVELQNSGGG SSKKWLVMEQQLREDLKDIVWAWNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029054 [exp]	0	1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	2.2	0.8456
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	2.8	0.8327
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015994 [exp]	5.5	0.8224
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10007021 [exp]	15.0	0.8153
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10037218 [exp]	15.3	0.7866
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10018852 [exp]	15.5	0.8171
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	16.7	0.8067
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	17.3	0.8158
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10028175 [exp]	20.5	0.8168
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	20.8	0.8102

Compare expression of checked genes

Lus10029054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.