Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40480 169 / 2e-47 Plant protein of unknown function (DUF827) (.1) AT3G56270 98 / 4e-22 Plant protein of unknown function (DUF827) (.1) AT3G51720 59 / 2e-09 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034211 [exp] 589 / 0 AT2G40480 385 / 1e-128 Plant protein of unknown function (DUF827) (.1) Lus10009099 [exp] 103 / 1e-23 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10025249 [exp] 99 / 3e-22 AT2G38370 327 / 5e-105 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049201 [exp] 255 / 2e-79 AT2G40480 358 / 3e-117 Plant protein of unknown function (DUF827) (.1) Potri.016G133300 [exp] 118 / 7e-29 AT2G38370 258 / 2e-78 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10029055 pacid=23151646 polypeptide=Lus10029055 locus=Lus10029055.g ID=Lus10029055.BGIv1.0 annot-version=v1.0 ATGACAATCCAAGTCCCCGGCCATATGTCGAGTCCAGCTGCTGCTATCAAAAGGGTGAACAAGGAATTTCATCATCAACAGCATTACGAGCAGCAGCAGA GGTTGATGATGATGAGTAGTCCTAGTCCCAGCCCGTCGTCGTCTCCCCAGATGATCTTGATGGAGCTGAAGCAGGCGAAGCTGAACCTTGGTAAAACCAT TAACGACCTCGGTGTGATTCAAACTTCTGTTGAGTCTCTGAACAAGGGCATGAAGCTAGAGAAATTGTTTCTTCAGAACACGCGCAAGAGGCTAACCTCG AAATTTGCAGGAGTGCTGTCGTTGGAGGAGGAGCTGAAACATGCTAGAAGGAAAGCGGAGCAGTTAAAGATGATGACAGAAGTTTCGAAGCCGGTAAATT TACAGTCTACTAAGAATGTCGATCTGAGAACTGTCGACTTGAGGCTTGTTGCAGCAAGAAAGATGGAGGAAGCTGCAAGGGCAGCTGAAGCCGTTGCATT AGCCGAGATCAAGTCTTTATCGGAGCCGGAGAAGCCATTCAAACCGGTTTCGCCTCTGGTCGATAAACCGGTCAATAAGGTCACGAAGTATGAACCTTCG AACAGTAAGATGCAGATCCTGAAGAAGATGAGAGAAGCAACAGAGGAAGTTAGAAGAAGCAAGCAGGCATTGGAAGACGCGCTGAACAAAGTCGAAATGG CGGGAAGGAAGCAATTCGACGCACAGGAAGCTTTCCTTAAATGGACTCCAGAAGATGATCAGGATCACGACGGTCTAGGACAGGCAGCTGCAGCTTACTA CAACACCAGACTCAGCAATATGCAGTTCTTCCGCCCTGCCGACCACTGCAAAGAACCTAACCGAATCGAACCCGAACCAAAGGCTGTGTTAAGGCCAACG GTGTCAATGCGGGACTTCCTAGGCAGGAAGCAGCGAGTCGTGGCCGAAGATTCGAGACCGGTAGAAGCAGCAGGAGGGCGTAACGGGAGGCAAAAGGTGG CATTGAGTCAGATGCTTCATGAGATAAGAGACGATATATCGTTCCATCCGAGGCCTCCGAAACACGAAGCGGGAGGAGATCAGAAGCAGCAGTTCTTTAC GCAGAGGAGGAAGTTCGGGTTCATCCATATATCGTTGCCTATGTCAAAACTAAGCAAGAAGAAAGATGCAAGATTTGATTAG
AA sequence Show only first row Show all	>Lus10029055 pacid=23151646 polypeptide=Lus10029055 locus=Lus10029055.g ID=Lus10029055.BGIv1.0 annot-version=v1.0 MTIQVPGHMSSPAAAIKRVNKEFHHQQHYEQQQRLMMMSSPSPSPSSSPQMILMELKQAKLNLGKTINDLGVIQTSVESLNKGMKLEKLFLQNTRKRLTS KFAGVLSLEEELKHARRKAEQLKMMTEVSKPVNLQSTKNVDLRTVDLRLVAARKMEEAARAAEAVALAEIKSLSEPEKPFKPVSPLVDKPVNKVTKYEPS NSKMQILKKMREATEEVRRSKQALEDALNKVEMAGRKQFDAQEAFLKWTPEDDQDHDGLGQAAAAYYNTRLSNMQFFRPADHCKEPNRIEPEPKAVLRPT VSMRDFLGRKQRVVAEDSRPVEAAGGRNGRQKVALSQMLHEIRDDISFHPRPPKHEAGGDQKQQFFTQRRKFGFIHISLPMSKLSKKKDARFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40480			Plant protein of unknown funct...		Lus10029055 [exp]	0	1
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	3.6	0.8169
AT2G40480			Plant protein of unknown funct...		Lus10029056 [exp]	6.3	0.7765
AT5G25510			Protein phosphatase 2A regulat...		Lus10012116 [exp]	8.4	0.7691
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	9.2	0.7803
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	9.3	0.7902
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	14.8	0.7623
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	15.3	0.7942
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	17.0	0.7808
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	19.3	0.7612
AT4G15240			Protein of unknown function (D...		Lus10039693 [exp]	27.8	0.7445

Compare expression of checked genes

Lus10029055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.