Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024121 [exp] 856 / 0 ND / Lus10005393 [exp] 684 / 0 ND / Lus10005392 [exp] 610 / 0 ND / Lus10024122 [exp] 607 / 0 ND / Lus10038309 [exp] 404 / 1e-133 ND / Lus10022836 [exp] 385 / 2e-128 ND / Lus10006341 [exp] 286 / 4e-90 ND / Lus10023559 [exp] 283 / 8e-88 ND / Lus10008536 [exp] 267 / 5e-84 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387900 [exp] 447 / 1e-150 ND / Potri.001G388801 [exp] 445 / 4e-150 ND / Potri.001G388450 [exp] 444 / 1e-149 ND / Potri.001G388600 [exp] 441 / 2e-148 ND / Potri.001G388200 [exp] 438 / 3e-147 ND / Potri.011G047300 [exp] 434 / 1e-145 ND / Potri.001G388100 [exp] 428 / 3e-144 ND / Potri.011G108300 [exp] 398 / 5e-132 ND / Potri.001G388900 [exp] 374 / 2e-122 ND / Potri.011G108200 [exp] 335 / 1e-107 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0122 [flax] [poplar] UTRA PF12143 [flax] [poplar] PPO1_KFDV Protein of unknown function (DUF_B2219) CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10029057 pacid=23151685 polypeptide=Lus10029057 locus=Lus10029057.g ID=Lus10029057.BGIv1.0 annot-version=v1.0 ATGGCTTCTGTCAATGCAACTTTCTCTTGTCCACTCAAGAAGCCAATCTTTAGCCACCGCCCAACTCCAAACAAATCCCGACTAACTGTTCCTTGCAAAT CTTCATCGGCAGGCAACAACAACAATAATAATGTTGACCCAATGATGATGAACCAATCAGCTGCCGCATGCAGAAGAGATGTCCTCCTTGGTCTTGGAGC CAGTCTTTACGGAGCCTCTGCTCTAACCGACCCTTTCTCCGCCGCCTTTGCCAGACCAATCGACGGGCCCAGTGTGGACGTGTGCAAGTTGGCAACAGCT GGTCAAGAAGCTGGTGAAATCAAGATCGAGTGTTGCCCCCCTTCATTGGCTGGGAAGGAGTTCAAGAACTACCAGCTCCCAGACCCCTCGATGCCAATGC GGATCAGAAGACCAGCTCATTTGGCAGTGAATGACAAAGTGTGGCTGGACAAATACAAACTGGCAATCCAAAAGATGAAGTGCCTCCCTGCTAACGACCC GCGTAGCTTCTACCAGCAGGCTAGGATCCATTGCGCTTACTGTAACGGCTCCTACGTCCAGGCCAACGACACTGAGAAAGGACTACAAGTCCACTTCTCG TGGCTCTTCCTCCCTTTCCACCGCATGTACCTCCATTTCTACGAGCGTATCTTGGGAAGCCTTATTGATGACCCAAGTTTCGCACTCCCCTTTTGGAACT GGGACCATGAAGACGGCATGGACATTCCCTCCATGTTCGTTGACCCGGAGTCCCCCATCTATGACGGCCTCCGCAACAAGATCCACCTTCCCCCCAACAA GCCTATTGATCTCCTGTGGGACAGAGAGATCGAAGACAAGCCAACTTCCCAGATTGTCCTGGACAACTACGGTTCCATCTATAACCGAATGGTCTCTGGT GCAACGAAAAGGGGCGAGTTCTTCGGAGCAAAATACCGGGCTGGTGATGACGCATTCAAACAGGACAGCCAGTCCGCCGGAACTTGCGAGCAGATGCACA ACATGGCTCATATATGGGTTGGCACGGTGGGTGGGTTAGGTGAAGACATGGGAAACTTCTACTCTGCTGGGAGGGACCCACTTTTTTACGTCCACCATTG CAACGTGGACAGGATGTGGAACATTTGGAAGAGCATAGGAAAGTACAGAATCGACTTTGACGAGTACGACTACGTCAACACCTCCTTCCTCTTCTACGAT GAGAACCAGGAGCTGATTAAGATCAAGGTCAAAGACGTTTTGGACAACGCCGCAATGAAATTCGACTACGAGGATAGGCCGCTTCTTTGGAGGAATGCTA GGCCCACCCCGACTAAGCCTAATGCGGATAGGTCCGCCACCTCCTCCAATGTGTTTGGAACAGAGAGTGCGCCCAACGCGGGAACTAAAACTCTGGGACC CAAGGCTGTTGACCCTTCCAAGCTGACGTCGCTGTCTTCGTTCCCTGTGGAGCTGAACAAGGTGATTAGTGTTATGGTGTCGAGGTCCAAAACTGGGAGG ACTCAGGCAGAAAAGCTAGAGAAAAGTGAGATATTGGTGGTTGAGGGGATCGAGATTGACGGAAGCAAGGTTGTCAGTTTCGATGTGGTGGTCAACGACG ACCCTGACAATCCAAGTGGACCGACGAGGTCAGAGTGGGCTGGTAACTTCCTCAACGTTCCCCACGTGCATGACCACGCTGGGAAGTTCACCACTTCACT AAGGATGGACATCACTGGTCTGTTGGAGGACATCGGTGCTGAAAATGACACTGAGCTGCGTGTGACTCTGGTGCCTAAGATTTCGGATGGCCCACTTGTT ATCGGTGGGGTCAGAATTGAGCTCAGTTCATAG
AA sequence Show only first row Show all	>Lus10029057 pacid=23151685 polypeptide=Lus10029057 locus=Lus10029057.g ID=Lus10029057.BGIv1.0 annot-version=v1.0 MASVNATFSCPLKKPIFSHRPTPNKSRLTVPCKSSSAGNNNNNNVDPMMMNQSAAACRRDVLLGLGASLYGASALTDPFSAAFARPIDGPSVDVCKLATA GQEAGEIKIECCPPSLAGKEFKNYQLPDPSMPMRIRRPAHLAVNDKVWLDKYKLAIQKMKCLPANDPRSFYQQARIHCAYCNGSYVQANDTEKGLQVHFS WLFLPFHRMYLHFYERILGSLIDDPSFALPFWNWDHEDGMDIPSMFVDPESPIYDGLRNKIHLPPNKPIDLLWDREIEDKPTSQIVLDNYGSIYNRMVSG ATKRGEFFGAKYRAGDDAFKQDSQSAGTCEQMHNMAHIWVGTVGGLGEDMGNFYSAGRDPLFYVHHCNVDRMWNIWKSIGKYRIDFDEYDYVNTSFLFYD ENQELIKIKVKDVLDNAAMKFDYEDRPLLWRNARPTPTKPNADRSATSSNVFGTESAPNAGTKTLGPKAVDPSKLTSLSSFPVELNKVISVMVSRSKTGR TQAEKLEKSEILVVEGIEIDGSKVVSFDVVVNDDPDNPSGPTRSEWAGNFLNVPHVHDHAGKFTTSLRMDITGLLEDIGAENDTELRVTLVPKISDGPLV IGGVRIELSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029057 [exp]	0	1
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10042835 [exp]	1.4	0.9095
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017925 [exp]	2.8	0.8824
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10021132 [exp]	4.2	0.8850
AT4G15620			Uncharacterised protein family...		Lus10031998 [exp]	5.5	0.8779
AT4G33800			unknown protein		Lus10006135 [exp]	7.6	0.9219
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10017351 [exp]	11.3	0.8552
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10038480 [exp]	11.8	0.8826
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017870 [exp]	13.0	0.9027
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	16.1	0.9018
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10018690 [exp]	19.4	0.8942

Compare expression of checked genes

Lus10029057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.