Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60360 265 / 6e-90 EDA14, UTP11 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034210 [exp] 448 / 2e-162 AT3G60360 264 / 6e-90 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024300 [exp] 321 / 3e-112 AT3G60360 287 / 7e-99 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1) Potri.006G026002 [exp] 123 / 5e-36 AT3G60360 101 / 7e-28 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF03998 [flax] [poplar] Utp11 Utp11 protein
Representative CDS sequence Show only first row Show all	>Lus10029059 pacid=23151779 polypeptide=Lus10029059 locus=Lus10029059.g ID=Lus10029059.BGIv1.0 annot-version=v1.0 ATGTCGTCTCTGAAGAATGTTCTCCCTCAAAGAATCCATAGGGAACGATCGCAACCAGAGTCGAGGAAGAAGTTTGGGCTTCTGGAGAAGCACAAGGACT ATGTTGTCCGTGCGAGGGCGTTCCAGAAGAAGCGAGATTTATTGAAGAATCTGGAAGAGAAAGCAGCTTTCAGAAATCCTGATGAGTTCTACCATCGCAT GATTAAATCCCAAACTGTAAATGGAGTTCATCGTTCGCTGGGTGAGCCTAATAAATACACACATGAAGAAATGATGTTGATGAAGACTCAAGATTCAGGA TACATTCTTGAAAAACTTCAGATCGAGAAAAAGAGAGTCGAAAAGCTTACTTCTGTGTTGCACTCAAGTGGAAATCAGCCATCAAACAAGCACATCTATT TTGCTGAAGATAGAGAGGAGGCGAAAGAGATAAAGAGATGCTATGCTGAAAAAGGCGAGAGTGCTCATAATCGAGGGATACCAGTACCTGATTCTATTCA GAGGAAAGTAGCCGTTTCATATAGAGAGCTAGAAGCCAGGAAGAATAGAGTAAACCAGCTGGAGAAGCTTTATATGGAGATGGAATTACAGAGGGAGCTA CAGAAAAAGGGCCGAAAGCGCAAGTTGCGAGAAGATGAGACCGTGACACCAGCATCCGGACCAGTTTACAAATGGAGAAGTGAACGCAAGAGGTGA
AA sequence Show only first row Show all	>Lus10029059 pacid=23151779 polypeptide=Lus10029059 locus=Lus10029059.g ID=Lus10029059.BGIv1.0 annot-version=v1.0 MSSLKNVLPQRIHRERSQPESRKKFGLLEKHKDYVVRARAFQKKRDLLKNLEEKAAFRNPDEFYHRMIKSQTVNGVHRSLGEPNKYTHEEMMLMKTQDSG YILEKLQIEKKRVEKLTSVLHSSGNQPSNKHIYFAEDREEAKEIKRCYAEKGESAHNRGIPVPDSIQRKVAVSYRELEARKNRVNQLEKLYMEMELQREL QKKGRKRKLREDETVTPASGPVYKWRSERKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10029059 [exp]	0	1
AT2G39170			unknown protein		Lus10017465 [exp]	3.7	0.8184
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	4.2	0.8346
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	6.0	0.8255
AT2G37120			S1FA-like DNA-binding protein ...		Lus10023177 [exp]	6.3	0.8264
AT3G18760			Translation elongation factor...		Lus10038301 [exp]	7.1	0.8401
AT5G37475			Translation initiation factor ...		Lus10008317 [exp]	7.2	0.7886
AT4G35540			zinc ion binding;transcription...		Lus10030407 [exp]	7.7	0.7483
AT2G19080			metaxin-related (.1)		Lus10015535 [exp]	7.7	0.8062
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	12.0	0.8101
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10010928 [exp]	13.0	0.8269

Compare expression of checked genes

Lus10029059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.