Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01790 45 / 5e-06 unknown protein AT2G40475 41 / 0.0001 ASG8 ALTERED SEED GERMINATION 8, unknown protein AT1G06930 39 / 0.0008 unknown protein AT3G56260 39 / 0.0009 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034209 [exp] 212 / 3e-71 AT1G06930 52 / 8e-09 unknown protein Lus10025251 [exp] 64 / 1e-12 AT1G06930 47 / 8e-07 unknown protein Lus10012896 [exp] 64 / 1e-12 AT2G40475 52 / 6e-08 ALTERED SEED GERMINATION 8, unknown protein Lus10009096 [exp] 63 / 2e-12 AT1G06930 47 / 2e-06 unknown protein Lus10030550 [exp] 59 / 8e-11 AT5G01790 50 / 2e-07 unknown protein Lus10009929 [exp] 39 / 0.0007 AT1G06930 61 / 1e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133200 [exp] 57 / 3e-10 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.006G107200 [exp] 53 / 5e-09 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 46 / 2e-06 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein Potri.013G156100 [exp] 43 / 4e-05 AT1G06930 / unknown protein Potri.019G127400 [exp] 42 / 5e-05 AT1G06930 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029060 pacid=23151699 polypeptide=Lus10029060 locus=Lus10029060.g ID=Lus10029060.BGIv1.0 annot-version=v1.0 ATGGTGGCCACTGAGTTGATGAAGCTTCATCAGCAAGACGCCAGAAAATTCTTCTTAACCACCACCACCACCGCTGGTAGCAGGAAGATAACGTCCGAGA AAGACATAAACGCCCTCCACAACCCATCTTTCAGAGTCTACTACGGCGGCTCTTCCGTCGCCGCCGTCCCTTTCACCTGGGAATCCGCGCCCGGCACTCC CAAGAACAAATTCTTCCCCTCCGACGACGACGACAACTACAGTAACCTCATTCCTCCGCTCACGCCGCCGCCTTCCTTCTACTCCTCCGCTGCCGCCTGC GCCGCCAATTACTCCCACTACTCCTCCTCCGGCGCCAAAAACATCCTCGGATCCTTGTTAGCTTCTTCCTCATCGTCGTCGTCCACGTCATCCTCTGGCG GGGATGCTGACGTGTACAACAGTAGGAGGAGGCAGAAGAAGAAGAAGCCGCATCTGATCAGCCGGTGGTTCTCCTGCTCCATCAGGAGACTTACAGTGGC AGATTGGTAG
AA sequence Show only first row Show all	>Lus10029060 pacid=23151699 polypeptide=Lus10029060 locus=Lus10029060.g ID=Lus10029060.BGIv1.0 annot-version=v1.0 MVATELMKLHQQDARKFFLTTTTTAGSRKITSEKDINALHNPSFRVYYGGSSVAAVPFTWESAPGTPKNKFFPSDDDDNYSNLIPPLTPPPSFYSSAAAC AANYSHYSSSGAKNILGSLLASSSSSSSTSSSGGDADVYNSRRRQKKKKPHLISRWFSCSIRRLTVADW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01790			unknown protein		Lus10029060 [exp]	0	1
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	3.9	0.9119
AT4G35160			O-methyltransferase family pro...		Lus10023986 [exp]	4.7	0.8967
					Lus10007012 [exp]	5.2	0.8965
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10039728 [exp]	5.8	0.8589
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	9.5	0.8794
AT3G19340			Protein of unknown function (D...		Lus10012581 [exp]	9.8	0.8857
					Lus10007009 [exp]	9.9	0.8906
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Lus10037895 [exp]	17.3	0.8930
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	17.5	0.8946
AT4G27745			Yippee family putative zinc-bi...		Lus10033226 [exp]	17.5	0.8653

Compare expression of checked genes

Lus10029060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.