Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30340 168 / 6e-52 AS2 LBD13 LOB domain-containing protein 13 (.1) AT2G40470 149 / 8e-45 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) AT5G63090 122 / 8e-35 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT2G30130 121 / 1e-34 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT3G27650 114 / 4e-32 AS2 LBD25 LOB domain-containing protein 25 (.1) AT5G66870 117 / 8e-32 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT1G16530 112 / 2e-31 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT1G07900 108 / 2e-29 AS2 LBD1 LOB domain-containing protein 1 (.1) AT1G31320 107 / 2e-29 AS2 LBD4 LOB domain-containing protein 4 (.1) AT2G23660 109 / 8e-29 AS2 LBD10 LOB domain-containing protein 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034208 [exp] 248 / 6e-84 AT2G30340 201 / 9e-65 LOB domain-containing protein 13 (.1) Lus10009930 [exp] 161 / 1e-49 AT2G30340 230 / 5e-76 LOB domain-containing protein 13 (.1) Lus10024183 [exp] 143 / 1e-42 AT2G30340 230 / 4e-76 LOB domain-containing protein 13 (.1) Lus10018275 [exp] 121 / 1e-34 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10027676 [exp] 120 / 3e-34 AT5G63090 233 / 8e-79 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10040638 [exp] 120 / 3e-34 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10031285 [exp] 120 / 4e-34 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031191 [exp] 119 / 4e-34 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10039940 [exp] 119 / 1e-33 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G081200 [exp] 161 / 1e-49 AT2G40470 249 / 2e-84 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.013G156200 [exp] 155 / 2e-47 AT2G40470 207 / 2e-67 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.019G127300 [exp] 144 / 3e-43 AT2G40470 225 / 1e-74 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.005G097800 [exp] 125 / 2e-36 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.007G066700 [exp] 124 / 4e-36 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.001G081400 [exp] 120 / 3e-34 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.010G184400 [exp] 119 / 8e-34 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.003G149000 [exp] 119 / 1e-33 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.015G082200 [exp] 119 / 1e-33 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.001G281600 [exp] 117 / 2e-33 AT2G30130 248 / 4e-85 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10029061 pacid=23151837 polypeptide=Lus10029061 locus=Lus10029061.g ID=Lus10029061.BGIv1.0 annot-version=v1.0 ATGGAGAATTCAGATGATGTAGAAAGAGTGATGATGCTAAGTAGTAATAGTAGTCAAGCATCAGGAGGACTGAATACAATAACTCCATGTGCAGCCTGCA AGCTGCTGAGGAGGAGATGTGCAGCTCAAGAGTGCCCTTTCTCGCCATACTTCTCCCCTCTCGAGCCCCACAAGTTTGCTTACGTCCACAAGGTCTTTGG TGCCAGCAATGTCTCCAAGATGCTCACGGAAGTGGGAGAGAGCCAAAGGTGGGATGCGGCAAACAGCCTAGTATACGAGGCAAGTGTGAGGCTAAGAGAC CCTGTTCATGGGTGCATGGGTGCAATCTCACTTCTCCAACACCAAATCCACTCTTTGGAATCCGAACTCACCACTCTCAGGGCCGAGATTCTTCATCATA GATACAATGCTGCAGCAGCAACACCACCATCAACAATGGACATTGTTACTACTACTACTACATCACCTATGATCATCAATTCCCCTCCTCCTGTTGATTT TAGCCATGATGTTCGAGGCCAAGGGGCAGTGCTCCTTCCTCCCGTCACACTGTCGACAGATTCTTCTTCCTCGTCCTCCCCTTCGAATCGTTATGGTGGC ATTTCGAATAATGATCACAACATCCCCTTCTATGGTTAA
AA sequence Show only first row Show all	>Lus10029061 pacid=23151837 polypeptide=Lus10029061 locus=Lus10029061.g ID=Lus10029061.BGIv1.0 annot-version=v1.0 MENSDDVERVMMLSSNSSQASGGLNTITPCAACKLLRRRCAAQECPFSPYFSPLEPHKFAYVHKVFGASNVSKMLTEVGESQRWDAANSLVYEASVRLRD PVHGCMGAISLLQHQIHSLESELTTLRAEILHHRYNAAAATPPSTMDIVTTTTTSPMIINSPPPVDFSHDVRGQGAVLLPPVTLSTDSSSSSSPSNRYGG ISNNDHNIPFYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10029061 [exp]	0	1
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10038179 [exp]	1.7	0.7962
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	2.0	0.8081
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	2.6	0.8235
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	4.5	0.7791
					Lus10000901 [exp]	7.7	0.7138
					Lus10027003 [exp]	10.0	0.7763
					Lus10000085 [exp]	10.0	0.7243
AT2G15130			Plant basic secretory protein ...		Lus10026583 [exp]	14.5	0.7148
					Lus10040421 [exp]	18.7	0.7620
AT5G14380		AGP6	arabinogalactan protein 6 (.1)		Lus10022309 [exp]	22.8	0.6729

Compare expression of checked genes

Lus10029061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.