Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 253 / 3e-83 Peroxidase superfamily protein (.1) AT5G58400 222 / 6e-71 Peroxidase superfamily protein (.1) AT5G58390 206 / 6e-65 Peroxidase superfamily protein (.1) AT5G06730 163 / 8e-48 Peroxidase superfamily protein (.1) AT5G06720 161 / 2e-47 ATPA2 peroxidase 2 (.1) AT4G36430 160 / 6e-47 Peroxidase superfamily protein (.1) AT3G50990 156 / 3e-45 Peroxidase superfamily protein (.1) AT2G18140 155 / 4e-45 Peroxidase superfamily protein (.1) AT5G66390 155 / 5e-45 Peroxidase superfamily protein (.1) AT3G32980 150 / 6e-43 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034207 [exp] 369 / 2e-128 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10006534 [exp] 237 / 1e-76 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 228 / 2e-72 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10030149 [exp] 219 / 2e-69 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10030148 [exp] 213 / 5e-68 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10009932 [exp] 216 / 5e-67 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10032786 [exp] 204 / 5e-64 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 202 / 1e-63 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10024209 [exp] 198 / 1e-61 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083600 [exp] 280 / 8e-94 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 256 / 2e-84 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 226 / 4e-72 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 220 / 3e-70 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 217 / 4e-69 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 206 / 7e-65 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 205 / 2e-64 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 205 / 2e-64 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 204 / 3e-64 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 202 / 2e-63 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10029062 pacid=23151807 polypeptide=Lus10029062 locus=Lus10029062.g ID=Lus10029062.BGIv1.0 annot-version=v1.0 ATGGCTTCTACTTCTAGTGTTGTCATGAGCTTGGCTATGGCGATGCTGCTCCTAGTTGTTGGGAGCAGTGAAGCTCAGCTCTCCACGAACTTCTACTCGA AATCCTGCCCTAAGCTTCACGAAGCTATCCTCCCTGTCGTTCAGGCTGCTGTTAGGAAAGAAGCTCGCATGGGCGCTTCTCTTCTTCGCCTCTTCTTCCA TGACTGCTTTGTCAATGGATGCGACGGCTCCATTCTGCTGGACGACACCTCCTCCTTCACCGGAGAGAAGAACGCCAACCCGAACCGCAACTCCGCCAGG GCACCACCCCAAACCGCAACTCCGCTAGAGGCTTTGACGTCATCGACAACATCAAGGCCGCCGTCGAGAAGGCTTGCCCCGGCGTCGTATCATGCGCCGA CGTCCTCGCCATCTCCGCCCCTGGGGGGTCCCACCTGGAACGTGAAACTCGGGAGGCGAGACGCAAGGACAAATCCCGCCGCCGACGTCCAAGCAAAACC GTCTCACCAGCCGGTTCAACGCGCTGGGCCGAGAATCTACAACGAGAACAACATCGACGGGTCGTTAGCCCGGACCCGGAGATCCAATTGCCCGAGCCGG AACGGAACCGGAGACAACAACCTGGCGCCGCTCGATTTCCAGACCCCGACCTCGTTCGACAACCGCTACTTTGGAAACCTCGTCAGCCAGCGCGGGCTGC TACACTCCGACCAGCAGCTGTTCTCCGGCGCCGGGTCTACCGACTCGATCGTTCGTAGCTACAGCACTAATGAGGGGGCGTTCAAGTCTGATTTCGCGTC GGCGATGGTGAAGATGGGAGATATTAGCCCTTTGACTGGATCGAGCGGCGAGATCAGGAGGAACTGCAGGAGGCCGAATTAA
AA sequence Show only first row Show all	>Lus10029062 pacid=23151807 polypeptide=Lus10029062 locus=Lus10029062.g ID=Lus10029062.BGIv1.0 annot-version=v1.0 MASTSSVVMSLAMAMLLLVVGSSEAQLSTNFYSKSCPKLHEAILPVVQAAVRKEARMGASLLRLFFHDCFVNGCDGSILLDDTSSFTGEKNANPNRNSAR APPQTATPLEALTSSTTSRPPSRRLAPASYHAPTSSPSPPLGGPTWNVKLGRRDARTNPAADVQAKPSHQPVQRAGPRIYNENNIDGSLARTRRSNCPSR NGTGDNNLAPLDFQTPTSFDNRYFGNLVSQRGLLHSDQQLFSGAGSTDSIVRSYSTNEGAFKSDFASAMVKMGDISPLTGSSGEIRRNCRRPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	1.0	0.9765
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	1.4	0.9750
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	1.7	0.9689
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	2.0	0.9631
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033735 [exp]	2.8	0.9515
AT4G27290			S-locus lectin protein kinase ...		Lus10038553 [exp]	3.7	0.9529
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	3.9	0.9598
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	5.2	0.9500
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	6.9	0.9552
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	7.4	0.9465

Compare expression of checked genes

Lus10029062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.