Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40460 582 / 0 Major facilitator superfamily protein (.1) AT5G46050 412 / 3e-138 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 412 / 3e-138 Major facilitator superfamily protein (.1) AT1G62200 368 / 2e-121 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 361 / 1e-118 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G54140 360 / 2e-118 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 350 / 2e-114 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 338 / 5e-110 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G37900 318 / 5e-102 Major facilitator superfamily protein (.1) AT3G53960 309 / 2e-98 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034206 [exp] 850 / 0 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10022891 [exp] 446 / 2e-151 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 441 / 1e-149 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 438 / 3e-148 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 433 / 2e-146 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 438 / 3e-142 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 422 / 4e-142 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10030947 [exp] 377 / 1e-124 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024935 [exp] 376 / 1e-124 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G055800 [exp] 628 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.002G258900 [exp] 453 / 4e-154 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 444 / 6e-151 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 442 / 3e-150 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 442 / 4e-150 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G100200 [exp] 380 / 7e-126 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 365 / 2e-120 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 350 / 2e-114 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 349 / 4e-114 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 348 / 9e-114 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10029063 pacid=23151844 polypeptide=Lus10029063 locus=Lus10029063.g ID=Lus10029063.BGIv1.0 annot-version=v1.0 ATGGAGGCCAAAGGTAACACACAGGATGGCACAGTGGACATCCGAGGCCGACCAATCCTCGCTTCGAAAACGGGAAAATGGAAAGCCTGTGCTTTTCTAC TCGGGTACGAAGCATTTGAGAGGATGTGTTTCTACGGGATAGCATCAAACTTGGTGAACTACTTGACGACCCAACTCCGCGAGGACACCGTCTCGTCGGT TAGGAACGTCAACAACTGGTCTGGTGCCGTTTGGATCACCCCGATTCTCGGAGCCTACATTGCCGATACTTACCTGGGCCGGTTCTGGACCTTCACCGTC TCGTCCCTTGTTTACGTCCTCGGAATGGTGATGCTAACAATGGCAGCATCCCTAAAATCCATGAAACCAAAATGCACCACACCCCTATGCACCAACCCAT CATCCCATTCCCAGATCGCATTCTTCTACCTATCACTCTACGTCATCGCCCTCGGTTCGGGCGGAACAAAACCCAACATCTCGACCTTCGGGGCGGACCA ATTCGACGAGCTCGACCCGCTCGAGAAGAAACTTAAAGCTTCCTTCTTCAATTGGTGGATGTTCAGCTCGTTCCTCGGCGGACTGGTCGCCAACGTCGGG CTCGTCTACGTCCAGGAGAATTTCGGGTGGGGTTTGGGGTACGGCATTCCCACGGTGGGGTTGCTGATGTCTCTGTTTGTGTTTTATATCGGGACTCCGA TTTACAGGCATAAGGCTGTGAATGTCGTGGAGAGTCCGGCGAGGCATGTTTGGTCGGTGTTCGTTAAGGCGTTCAGGAATAGGAAGTTGATGTTGCCGGA GGATCCCGATCAGCTTTATGTTGGGAGCGGGAAGCGCCGCGTCCTGCATTCCCCTGTTTTCCGCTGCTTAGACAGAGCTGCAATACTCCCACCGTCAAAA GAAGGAAATACCACAAATACCCTGCCGTGCACGGTGACACAGGCGGAGGAAACCAAGCTCATCCTGGGCATGCTCGTAATCTGGTTCGTCACATTAGTCC CCAGCACACTGTGGGCCCAGATCAACACCTTGTTCGTCAAGCAAGGGACAACCTTGGACCGCACCCTCGGCGGCGGAGCCGCCTTCCAGATCCCGGCGGC TTCATTGGGGAGCTTCGTACAAATCTCAATGCTCCTCACTCTCCCTCTCTACGACCGCGTTTTCGTCCCCTTCATGAGGTCCTCGACTGGAAACCCACGT GGCATTTCCTTACTTCAGCGCCTCGGCATCGGCTTCCTCATCCAGATCGTCGCCGTCGCTGTCGCTTACGCCGTCGAAGTCAGGAGGATGCATGTCATCA GGTTGACAGTGGACGCCCACTCCGTTATTGCCGGCGGCGGAGGGAAGCGGTGGATTGGGAACGACTTGAACGACTCCCGTTTGGACTACTACTATGGGTT CCTTTTGGTCCTGTCCACTTTGAATTTGGGGGCTTTTGTTTGGGCTTCGAGCAAGTACGTTTATAAGAAAGAAGTGGTCTTTAGTGTGGATCAAAAGGGT GGTGGGTTGCTGCCGGCGGTGGCAGTGGCGGCGGGCGATCAGTGTGAAATGGATGGGAAAGTTTAG
AA sequence Show only first row Show all	>Lus10029063 pacid=23151844 polypeptide=Lus10029063 locus=Lus10029063.g ID=Lus10029063.BGIv1.0 annot-version=v1.0 MEAKGNTQDGTVDIRGRPILASKTGKWKACAFLLGYEAFERMCFYGIASNLVNYLTTQLREDTVSSVRNVNNWSGAVWITPILGAYIADTYLGRFWTFTV SSLVYVLGMVMLTMAASLKSMKPKCTTPLCTNPSSHSQIAFFYLSLYVIALGSGGTKPNISTFGADQFDELDPLEKKLKASFFNWWMFSSFLGGLVANVG LVYVQENFGWGLGYGIPTVGLLMSLFVFYIGTPIYRHKAVNVVESPARHVWSVFVKAFRNRKLMLPEDPDQLYVGSGKRRVLHSPVFRCLDRAAILPPSK EGNTTNTLPCTVTQAEETKLILGMLVIWFVTLVPSTLWAQINTLFVKQGTTLDRTLGGGAAFQIPAASLGSFVQISMLLTLPLYDRVFVPFMRSSTGNPR GISLLQRLGIGFLIQIVAVAVAYAVEVRRMHVIRLTVDAHSVIAGGGGKRWIGNDLNDSRLDYYYGFLLVLSTLNLGAFVWASSKYVYKKEVVFSVDQKG GGLLPAVAVAAGDQCEMDGKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40460			Major facilitator superfamily ...		Lus10029063 [exp]	0	1
AT4G32630			ArfGap/RecO-like zinc finger d...		Lus10022113 [exp]	7.3	0.7703
					Lus10006880 [exp]	13.4	0.6811
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10010453 [exp]	16.9	0.7498
AT1G66830			Leucine-rich repeat protein ki...		Lus10017611 [exp]	17.3	0.7701
					Lus10000363 [exp]	18.8	0.7379
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	19.6	0.7649
					Lus10003285 [exp]	20.3	0.7379
					Lus10004996 [exp]	21.7	0.7379
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	23.0	0.7379
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	24.3	0.7379

Compare expression of checked genes

Lus10029063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.