Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 332 / 3e-113 Peroxidase superfamily protein (.1) AT5G58400 308 / 6e-104 Peroxidase superfamily protein (.1) AT2G18140 305 / 2e-102 Peroxidase superfamily protein (.1) AT4G36430 305 / 2e-102 Peroxidase superfamily protein (.1) AT5G06720 302 / 2e-101 ATPA2 peroxidase 2 (.1) AT2G18150 300 / 3e-100 Peroxidase superfamily protein (.1) AT5G66390 299 / 4e-100 Peroxidase superfamily protein (.1) AT5G58390 295 / 9e-99 Peroxidase superfamily protein (.1) AT3G50990 291 / 6e-97 Peroxidase superfamily protein (.1) AT5G06730 291 / 1e-96 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034204 [exp] 597 / 0 AT5G05340 336 / 9e-115 Peroxidase superfamily protein (.1) Lus10034207 [exp] 347 / 4e-119 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10009936 [exp] 338 / 1e-115 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10009935 [exp] 327 / 3e-111 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10030145 [exp] 324 / 9e-110 AT5G05340 353 / 2e-121 Peroxidase superfamily protein (.1) Lus10008581 [exp] 320 / 2e-108 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10032786 [exp] 311 / 7e-105 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 307 / 1e-103 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10041784 [exp] 307 / 2e-103 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083600 [exp] 348 / 9e-120 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 338 / 1e-115 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 333 / 2e-113 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 330 / 1e-111 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 326 / 5e-111 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G156800 [exp] 326 / 8e-111 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 322 / 3e-109 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 317 / 2e-107 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 314 / 4e-106 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 314 / 4e-106 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10029065 pacid=23151794 polypeptide=Lus10029065 locus=Lus10029065.g ID=Lus10029065.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCGAACACCACTTTCTGCCTCATTCTGTTACTTGCTGTTGTTGGTTCTGCAGCTTCCAGTGGCAGTCTCTCACCGGAGTATTACTCGAAGA CCTGCCCCGAAGCACCGGCCATAGTCAAAGCAGTAGTCGGGGCAGCACTAAAGAACGAGACTCGAATGGGGGCGTCCCTCCTTCGCCTGCATTTCCATGA CTGTTTTGTCAACGGATGCGATGCCTCGATTCTGCTCGATGATAACGTGACATTCGTTGGGGAGAAAACTGCTTCTCCCAACATCAACTCCACCAGAGGG TATGAAGTTATAGACAAGATCAAGGCTCAGGTGGAAGAAGAATGCCCTGGAGTTGTGTCTTGTGCTGATATACTTGCCTTGGCAGCCGTGGACTCTGTGG TTTATCTTGGAGGACCTTGGTGGGAAGTTGGATTGGGAAGAAGGGACTCCATCACTGCAAGCAAAGAAGCTGCTGAAGTATCCTTACCTCAACCAACCTT CAATCTGAGTGATCTGGCTGCAAATTTTTGGGCACACGGCCTTTCTCTCCGGGACCTGGTTGCACTTTCAGGTGCACACACGATAGGAATGGCGAGATGC ACGACATTCCGAGACCACATCTACAACGACACCGACATCGACCCAACATTCGCAAAATGGCTGCGGAAGATCTGCCCTCCGATCGGACACGACGACGTCC TCACACCTCTTGATTACCAAACTCCCCTCCGTTTCGACAATTCCTACTACCTCAACTTGGTCAAGGAGAGAGGCCTCCTCCACTCGGACCAGGAGCTCTA CGATGATGATAATGACGATGATGATTCCTCGGCTCGTTCTGTTGCCAGAACACTGTACGAAACTCGACCTTCCAATGACTTCTTCAACAAGATAGCCAAG ATCAGGCCGGTCACCGAAAACCACGCTGCTTCGATTGTTCGAATCTACGCCGATCATCCTGCGGCGTTCTTTGAGGATTTCAGTAAGGGCATGATCAAAA TGGGGGAGATCATGCCTCTTACTGGAGATGCAGGGGAGATCAGGAAGAACTGCAGAAAAGCCAACTGA
AA sequence Show only first row Show all	>Lus10029065 pacid=23151794 polypeptide=Lus10029065 locus=Lus10029065.g ID=Lus10029065.BGIv1.0 annot-version=v1.0 MAPPNTTFCLILLLAVVGSAASSGSLSPEYYSKTCPEAPAIVKAVVGAALKNETRMGASLLRLHFHDCFVNGCDASILLDDNVTFVGEKTASPNINSTRG YEVIDKIKAQVEEECPGVVSCADILALAAVDSVVYLGGPWWEVGLGRRDSITASKEAAEVSLPQPTFNLSDLAANFWAHGLSLRDLVALSGAHTIGMARC TTFRDHIYNDTDIDPTFAKWLRKICPPIGHDDVLTPLDYQTPLRFDNSYYLNLVKERGLLHSDQELYDDDNDDDDSSARSVARTLYETRPSNDFFNKIAK IRPVTENHAASIVRIYADHPAAFFEDFSKGMIKMGEIMPLTGDAGEIRKNCRKAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	0	1
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	1.7	0.8720
AT5G17350			unknown protein		Lus10035268 [exp]	4.7	0.8366
AT4G16490			ARM repeat superfamily protein...		Lus10038811 [exp]	6.0	0.8314
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	8.1	0.8176
					Lus10039878 [exp]	8.1	0.8319
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	8.5	0.8259
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	9.2	0.8133
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	9.5	0.8308
AT1G72460			Leucine-rich repeat protein ki...		Lus10027645 [exp]	10.0	0.8255
AT5G17350			unknown protein		Lus10034636 [exp]	10.8	0.8352

Compare expression of checked genes

Lus10029065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.