Plant FIBer expression Database

Lus10029066 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19900 233 / 2e-77 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034203
[exp]
350 / 6e-124 AT3G19900 235 / 1e-78 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G169700
[exp]
250 / 3e-84 AT3G19900 243 / 2e-81 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11267 DUF3067 Domain of unknown function (DUF3067)
Representative CDS sequence
>Lus10029066 pacid=23151659 polypeptide=Lus10029066 locus=Lus10029066.g ID=Lus10029066.BGIv1.0 annot-version=v1.0
ATGACGAGCTTCGTGTCATCAAGCCACCGCAGCTACTGGTCAGTACGGAATCAGGAGCAACAGATTCCGGAAATCAGAAAAAGATTCAGCAATTGCGTTA
AACTTCCATTCTCTGCCGCAGATCGTCACTATCATCATGCTGGGTCGACTTGCAGAAGGTCGTCATCCAAGAGATTCCGGCCTGTGTTTGCCACTGTGGT
AGGTAGTGGCGGTGATGACGACGATCCAGATGATGCGGAAGATGGGAAGAAGAATGATGATACTAATTCGAAAAGGGAAAGCGAAAGGGAGGGTGGCAGT
GATGCGGTTAGAGACAATCTGGAGAGGATTGTGGGGAGAGACGACTCGAAATTCAGCGGGATAGACCTGGCGACGCTGATCAGGAAAAAGTACGGGAGGT
CTTACGATGTTCAACTCATAAAGAAGGAGTTCATGGGGAAGAACTTCCTCGCCATGAACGTAATGTGGAAGTATACAGAGCAGAGATCGTTTCCGCTGAC
GGAGGAAGAGTATCTGTTGAGGCTGGACGATGTGGCCAACACGTTGAAGTGTTGGGGAGCAGTCTCGCATATTCGAGACAGCTTACAGAAGTTGAAGGAG
CGGCCACGCATCGGCAAGGCAGTTAGCATTTTCATAGACATGGACGAAACAGGAGGCCGCGCAAACGAATGGATTTACAAGTAG
AA sequence
>Lus10029066 pacid=23151659 polypeptide=Lus10029066 locus=Lus10029066.g ID=Lus10029066.BGIv1.0 annot-version=v1.0
MTSFVSSSHRSYWSVRNQEQQIPEIRKRFSNCVKLPFSAADRHYHHAGSTCRRSSSKRFRPVFATVVGSGGDDDDPDDAEDGKKNDDTNSKRESEREGGS
DAVRDNLERIVGRDDSKFSGIDLATLIRKKYGRSYDVQLIKKEFMGKNFLAMNVMWKYTEQRSFPLTEEEYLLRLDDVANTLKCWGAVSHIRDSLQKLKE
RPRIGKAVSIFIDMDETGGRANEWIYK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19900 unknown protein Lus10029066
[exp]
0 1
AT3G19900 unknown protein Lus10034203
[exp]
1.0 0.9277
AT5G64840 ABCF5, ATGCN5 ATP-binding cassette F5, gener... Lus10006804
[exp]
1.7 0.9034
AT1G67840 CSK chloroplast sensor kinase (.1.... Lus10006470
[exp]
2.6 0.8981
AT1G06690 NAD(P)-linked oxidoreductase s... Lus10002744
[exp]
7.3 0.9122
AT5G67030 NPQ2, LOS6, IBS... NON-PHOTOCHEMICAL QUENCHING 2,... Lus10009359
[exp]
10.0 0.8996
AT4G22260 IM1, IM IMMUTANS, Alternative oxidase ... Lus10037518
[exp]
14.3 0.8542
AT4G39970 Haloacid dehalogenase-like hyd... Lus10000633
[exp]
15.4 0.9025
AT3G10130 SOUL heme-binding family prote... Lus10022712
[exp]
17.4 0.8756
AT4G03410 Peroxisomal membrane 22 kDa (M... Lus10039800
[exp]
19.3 0.8862
AT1G06690 NAD(P)-linked oxidoreductase s... Lus10016327
[exp]
19.9 0.8989

Lus10029066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.