Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27640 1620 / 0 ARM repeat superfamily protein (.1) AT5G19820 294 / 1e-83 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT2G16950 64 / 3e-10 ATTRN1 transportin 1 (.1.2) AT2G16960 51 / 4e-06 ARM repeat superfamily protein (.1.2) AT1G26170 49 / 2e-05 ARM repeat superfamily protein (.1) AT1G64790 46 / 0.0002 ILA ILITYHIA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034202 [exp] 2026 / 0 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1) Lus10013763 [exp] 186 / 3e-48 AT5G19820 1295 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10039172 [exp] 183 / 5e-47 AT5G19820 1229 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10025083 [exp] 48 / 6e-05 AT2G16950 1392 / 0.0 transportin 1 (.1.2) Lus10023999 [exp] 47 / 0.0001 AT2G16950 1380 / 0.0 transportin 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169800 [exp] 1752 / 0 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 1751 / 0 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 285 / 2e-80 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.001G004800 [exp] 280 / 8e-79 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 278 / 6e-78 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.017G137400 [exp] 110 / 2e-24 AT5G19820 682 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G082601 [exp] 87 / 3e-17 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.T108626 [exp] 53 / 1e-06 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.008G109300 [exp] 53 / 2e-06 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.009G138200 [exp] 44 / 0.0005 AT2G16950 1316 / 0.0 transportin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10029067 pacid=23151767 polypeptide=Lus10029067 locus=Lus10029067.g ID=Lus10029067.BGIv1.0 annot-version=v1.0 ATGGCGCAGTCACTCGAGCTCCTCCTAATCCAATTCTTGATGCCTGACAACGACGCTCGGATGCAGGCGGAGGAGCAGATAAAGCGGCTTGCCAAGGATC CTCAGGTCGTCCCCGCTCTCGTCCAGCACCTCCGCACCGCCAAAACTCCCGGCGTCCGCCAGCTCGCCGCCGTTCTCCTCCGAAAGAAGATCACCGGTCA TTGGGCCAAGCTTCCTCCCAACCTCAAGCACCTCGTCAAGCAGTCCCTAATCGAGAGCATCACCATGGAGCACAGTTCTCCAGTGAGGAGTGCTAGTGCC CATGTAGTGAGCATCATTGCTAAGTACGCTGTGCCAGCTGGGGAATGGCCTGACCTGCTGCCGTTTTTGTTCCAATGTAGTCAAAGTGCTCAGGAAGATC ATAGAGAGGTGGCGTTGATCCTTTTCAGTTCCTTGACTGAAACCATTGGGAATGCTTTCCAACCTTATTTTGCGGATCTCCAAGCACTTCTGTTAAAATG TCAACAAGACGAAGCTAGTAGCCGTGTTAGAGTTGCTGCTCTGAAGGCTGTGGGATCATTTCTCGAATTTACAAACGATGGAACTGATGTGGTCAAGTTC AGGCTATTCATTCCTAGCATTTTGAATGTAGCAAGACAATTGCTTGCTTCCGGAGACGAGGATGTTGCTGTGATTGCTTTCGAAATTTTTGATGAGTTGA TTGAATCACCTGCACCGCTTCTTGGAGATTCTGTTAAATCAATTGTGCAGTTCTCGCTTGAAGTTTGCTCTAGTCAAGATTTGTTTTCCAATACTCGTCA CCAGGCTGTTCAAATTATTTCGTGGCTGGCAAGGTACAAAGCTAATTCCTTGAAAAAGTACAAGCTGGTTATCCCAATTTTGCAAGTGATGTGTCCCTTG CTGGCAGAGTCTACCAACTCTGCTGACGATGATCTTGCCCCAGATAGGGCTGCTGCAGAGGTTATTGACACAATGGCGTTGAGCCTTCCAAAGCACGTTT TCCCTGCTATTTTTGAGTTCTCCTCGTTAAGCAGTCAAAATGTCAATCCAAAGTACCGGGAAGCTTCTGTTACAGCATTGGGAATAGTCTCAGAGGGTTG TTTGGACTTGATGATAGATAAGTTGGAACCAGTTCTTCATATCGTCTTGGGTGCTTTGAGGGATCCAGAACAAGTGGTTAGAGGGGCAGCCTCATTTGCA CTGGGTCAATTTGCAGAGCATTTGCAACCAGATATAGTGTCTCACTATCAAAGTGTTCTGCCTTGTATCTTAAATGCTTTAGAGGATGCATCTGATGAAG TAAAGGAAAAGTCATATTATGCACTAGCTGCTTTCTGTGAGAACATGGGTGAAGAAATCCTTCCTTTTCTCGATCCATTGATGGTGAAGCTACTTGGAGC ACTGCAAAGCAGTCCTCGTAATTTGCAAGAAACATGCATGTCTGCAATTGGTTCAGTTGCATCTGCTGCTGAGGTAGCTTTCATTCCATATGCTGAAAGG GTCCTTGAGTTGATGAAATCATTTATGGTACTTACCAATGATGAGGATCTTCGATCACGAGCAAGGGCTACCGAGCTTGTTGGAATAGTAGCAATGTCTG TAGGTAGAGGAAGAATGGAACCAATCTTACCCCCCTTCATGGAAGCTGCTGTTTCGGGTTTTGCGCTTGAATATAGTGAGCTCCGTGAATACAGTCATGG ATTCTTCAGCAATGTTGCTGAGATCATGGATGATGGTTTTGCACAGTATCTTCCCCATGTTGTACCCTTAGCATTTTCGTCATGTAATCTAGACGACGGC TCTGCTGTAGATATTGATGAATCTGATGATGAAAATATCAATGGATTTGGTGGGGTCTCATCTGATGACGAGGCACATGATGAACCTAGAGTTCGAAATA TCTGTGTAAGAACAGGAGTGCTGGATGAAAAGGCAGCTGCAACTCAAGCACTTGGCTTATTCGCTCTTCATACAAAGAATGCCTTTGCACCATATCTGGA GGAGGGTTTCAAGATATTGGTGAAACATTCCGAGTACTTCCATGAGGATTTGCGGCTTCAAGCAGTGATCTCCTTGAAACATATATTGACAGCAGCACAT GCAATCTTCCAAAATAATAGTGATGGACAAGCCAAGGCATTAGAGATACTAGATAAAGTGATGAATATTTATATCAAGGCAATGACCGATGATGATGATA AAGAAGTTGTTGCCCAAGCTTGCATGAGCATAGCCGATATTATTAAGGATTATGGTTACATGGCTGTTGAACCTTATATGCCACAGCTTGTTGATGCAAC ACTGAAGTTGATCAGAGAACAGGCTGCTTGTCAAGTGTCAGAAAATGACAGTGACGCTGAGGATGATGATGACACCTCGCATGATGAAGTTCTTATGGAT GCGGTGTCAGATCTTCTTCCAGCATTTGCGAAGGCCATGGGTCCTCAATTTGCACCTATTTTCGCAAACCTTTTTGAACCTTTGATGAAATTTGCGAAAG CTTCACGTCCTCCGCAAGACCGGACGATGGTGGTTGCTACCCTTGCTGAAGTTGCACAGCACATGGGTGCTCCCATTGGAGGCTACGTTGAGAAGTTGAT GCCAATAGTGCTTAAAGAATTGGCTTCATCAGACCCAACAAACAGGAGGAACGCTGCTTTTTGTGCTGGCGAGCTATGCAAGAATGGAGGGCAATCAGCT CTCAAAACCAGATTCTATGTTGACGTATTGCATCGACTGTTTCCCTTATTCGGGGAATCTGAACCCGATCTCGCTGTCAGGGATAACGCTGCCGGTGCAG TGGCAAGGATGATAATGACCTATCCTCAGTCTATCCCATTGGATCAGGTTCTTCCAGTTTTACTCAACTCTCTCCCATTAAAGGAGGACCACGAAGAGTC CATGGCTGTCTATAGTTGTATATCCACTCTGGTTTTCTCATCCAATTCACAGATCATCACACTAGTGCCCGACTTGGTCAATGTTTTCGCACAAGTCGTC GTGTCACCTGCAGAAAAACCTGAAGTGAAAGCTCAAGTTGGTCGAACATTCTCCCACCTGCTTTCGCTGTATGGCCAGCAAATGCAGCCTCTCTTGAGCA ACCTATCGCCTGCACATGCTAATGCTTTAGCTGAATTCGCTCCCAAAAGCTAA
AA sequence Show only first row Show all	>Lus10029067 pacid=23151767 polypeptide=Lus10029067 locus=Lus10029067.g ID=Lus10029067.BGIv1.0 annot-version=v1.0 MAQSLELLLIQFLMPDNDARMQAEEQIKRLAKDPQVVPALVQHLRTAKTPGVRQLAAVLLRKKITGHWAKLPPNLKHLVKQSLIESITMEHSSPVRSASA HVVSIIAKYAVPAGEWPDLLPFLFQCSQSAQEDHREVALILFSSLTETIGNAFQPYFADLQALLLKCQQDEASSRVRVAALKAVGSFLEFTNDGTDVVKF RLFIPSILNVARQLLASGDEDVAVIAFEIFDELIESPAPLLGDSVKSIVQFSLEVCSSQDLFSNTRHQAVQIISWLARYKANSLKKYKLVIPILQVMCPL LAESTNSADDDLAPDRAAAEVIDTMALSLPKHVFPAIFEFSSLSSQNVNPKYREASVTALGIVSEGCLDLMIDKLEPVLHIVLGALRDPEQVVRGAASFA LGQFAEHLQPDIVSHYQSVLPCILNALEDASDEVKEKSYYALAAFCENMGEEILPFLDPLMVKLLGALQSSPRNLQETCMSAIGSVASAAEVAFIPYAER VLELMKSFMVLTNDEDLRSRARATELVGIVAMSVGRGRMEPILPPFMEAAVSGFALEYSELREYSHGFFSNVAEIMDDGFAQYLPHVVPLAFSSCNLDDG SAVDIDESDDENINGFGGVSSDDEAHDEPRVRNICVRTGVLDEKAAATQALGLFALHTKNAFAPYLEEGFKILVKHSEYFHEDLRLQAVISLKHILTAAH AIFQNNSDGQAKALEILDKVMNIYIKAMTDDDDKEVVAQACMSIADIIKDYGYMAVEPYMPQLVDATLKLIREQAACQVSENDSDAEDDDDTSHDEVLMD AVSDLLPAFAKAMGPQFAPIFANLFEPLMKFAKASRPPQDRTMVVATLAEVAQHMGAPIGGYVEKLMPIVLKELASSDPTNRRNAAFCAGELCKNGGQSA LKTRFYVDVLHRLFPLFGESEPDLAVRDNAAGAVARMIMTYPQSIPLDQVLPVLLNSLPLKEDHEESMAVYSCISTLVFSSNSQIITLVPDLVNVFAQVV VSPAEKPEVKAQVGRTFSHLLSLYGQQMQPLLSNLSPAHANALAEFAPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27640			ARM repeat superfamily protein...		Lus10029067 [exp]	0	1
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10001714 [exp]	7.5	0.8851
AT2G46520			cellular apoptosis susceptibil...		Lus10005969 [exp]	13.8	0.8880
AT5G23430			Transducin/WD40 repeat-like su...		Lus10041007 [exp]	16.2	0.8825
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	19.2	0.8805
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	19.8	0.8756
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	22.6	0.8671
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015332 [exp]	24.7	0.8561
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	30.0	0.8316
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	34.0	0.8763
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	34.6	0.8803

Compare expression of checked genes

Lus10029067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.