Plant FIBer expression Database

Lus10029068 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19895 164 / 5e-48 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034201
[exp]
309 / 2e-103 AT3G19895 662 / 0.0 RING/U-box superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G085700
[exp]
209 / 8e-65 AT3G19895 707 / 0.0 RING/U-box superfamily protein (.1)
Potri.010G171100
[exp]
196 / 5e-60 AT3G19895 701 / 0.0 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10029068 pacid=23151683 polypeptide=Lus10029068 locus=Lus10029068.g ID=Lus10029068.BGIv1.0 annot-version=v1.0
ATGCAACACCACCACCACCTGCTACAGCAGCCACCGAATTCATCATCACCATCATCGCCCGCTCTTAAACCCACTACACCGAAGTCCAGCCAATCACCGT
TCACCGTCGGTCCGCTATCTGCTTCTCGCCTCGGACAACATCCGCCGCCGCCGTCCTCCTCCATCGATCATGTAATCTCGCAGGCAGCAGCTCACCAATC
CGGCGAGGAGGCACTGATGCTGGCGAAGGTCAGGCTGTCGGATATAACACTCTACGATGGGGCGCCCTGTGGGCCGTTCGTGAAGGCTGTTGAGGCGTTG
TCCGGTTCTCTGATGAGGCATAACGCTGCTGTGATCGAGTTAGGGAAAGAGGATGCTGTGTTGATGAAATGCGGCCTAGAAGCGTCACGCTTGTACTTTA
GGTGTCACGGTAAAGGAAGCAGCGGTCGTGGAGTTCATATGTACAGAGCCAAGTCTCACGAAGAATGGGATTCAGCTCCACCTTGCATGGCTGAAATATT
TAGGTGCATGGGAAAGGTCGCTCGGGCTGCTTTGTGTGCTATAGCAAGACATCTTCGTTTGAGAAGCGAGTAA
AA sequence
>Lus10029068 pacid=23151683 polypeptide=Lus10029068 locus=Lus10029068.g ID=Lus10029068.BGIv1.0 annot-version=v1.0
MQHHHHLLQQPPNSSSPSSPALKPTTPKSSQSPFTVGPLSASRLGQHPPPPSSSIDHVISQAAAHQSGEEALMLAKVRLSDITLYDGAPCGPFVKAVEAL
SGSLMRHNAAVIELGKEDAVLMKCGLEASRLYFRCHGKGSSGRGVHMYRAKSHEEWDSAPPCMAEIFRCMGKVARAALCAIARHLRLRSE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19895 RING/U-box superfamily protein... Lus10029068
[exp]
0 1
AT1G73590 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORME... Lus10018006
[exp]
2.4 0.8563
AT1G73590 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORME... Lus10042003
[exp]
3.0 0.8491
AT2G30340 AS2 LBD13 LOB domain-containing protein ... Lus10009930
[exp]
3.9 0.8591
AT1G73590 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORME... Lus10042004
[exp]
4.2 0.8369
AT5G57090 MM31, ATPIN2, A... WAVY ROOTS 6, ETHYLENE INSENSI... Lus10018007
[exp]
8.5 0.8322
AT4G24830 arginosuccinate synthase famil... Lus10013207
[exp]
8.8 0.8361
AT1G74030 ENO1 enolase 1 (.1) Lus10027255
[exp]
9.4 0.8485
AT4G16360 5'-AMP-activated protein kinas... Lus10038783
[exp]
10.2 0.8323
AT4G23500 Pectin lyase-like superfamily ... Lus10017517
[exp]
13.4 0.8077
AT1G10750 Protein of Unknown Function (D... Lus10013046
[exp]
22.4 0.7723

Lus10029068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.