Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19850 174 / 4e-50 Phototropic-responsive NPH3 family protein (.1) AT1G50280 160 / 6e-45 Phototropic-responsive NPH3 family protein (.1) AT5G64330 101 / 9e-24 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT1G03010 100 / 1e-23 Phototropic-responsive NPH3 family protein (.1) AT1G52770 98 / 7e-23 Phototropic-responsive NPH3 family protein (.1) AT5G48800 96 / 6e-22 Phototropic-responsive NPH3 family protein (.1) AT1G30440 96 / 1e-21 Phototropic-responsive NPH3 family protein (.1) AT3G08660 93 / 8e-21 Phototropic-responsive NPH3 family protein (.1) AT1G67900 93 / 9e-21 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G13600 92 / 1e-20 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034200 [exp] 371 / 6e-126 AT3G19850 390 / 1e-129 Phototropic-responsive NPH3 family protein (.1) Lus10030554 [exp] 201 / 3e-59 AT3G19850 414 / 5e-138 Phototropic-responsive NPH3 family protein (.1) Lus10012901 [exp] 196 / 1e-57 AT3G19850 415 / 3e-138 Phototropic-responsive NPH3 family protein (.1) Lus10039710 [exp] 126 / 1e-32 AT3G22104 433 / 9e-148 Phototropic-responsive NPH3 family protein (.1) Lus10018499 [exp] 121 / 6e-31 AT3G22104 420 / 2e-142 Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 101 / 1e-23 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 100 / 3e-23 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10005943 [exp] 97 / 4e-22 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 96 / 1e-21 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170900 [exp] 201 / 8e-60 AT3G19850 426 / 2e-143 Phototropic-responsive NPH3 family protein (.1) Potri.008G085500 [exp] 187 / 1e-54 AT3G19850 449 / 2e-152 Phototropic-responsive NPH3 family protein (.1) Potri.017G041600 [exp] 126 / 1e-32 AT3G22104 488 / 4e-169 Phototropic-responsive NPH3 family protein (.1) Potri.007G118800 [exp] 117 / 3e-29 AT3G22104 505 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.011G032100 [exp] 111 / 3e-27 AT3G22104 309 / 4e-99 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 103 / 2e-24 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G030600 [exp] 103 / 2e-24 AT3G22104 313 / 1e-100 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 103 / 2e-24 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.002G209700 [exp] 100 / 2e-23 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G175400 [exp] 99 / 4e-23 AT1G52770 507 / 8e-179 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10029070 pacid=23151716 polypeptide=Lus10029070 locus=Lus10029070.g ID=Lus10029070.BGIv1.0 annot-version=v1.0 ATGACGGAGGCCGTCTCCGCCGGAAACCTCCTCAAACAGACGGAGCATTTCCTCCGCGGGATTCCTAGCTGGTCTTTGTCGGATGTCGTTTCGAGCGTAG AATCGTGCGACTCTTTCTTCTCCTACGACAAGTTGGTAGACCTCGTGGAGAGGCTGATTTCCGGGGTGGTAGCGAAAATTTCCACGTCATCGGTTGACTC TTCATCATCGGAGTCTTCTTCTTCAACGTCAGCGGATGACATGTTGCTCGATCAAGCCAGCCTGGACGATCTGCTGGTCACCGGCAATGACAATGGCAAT GGCGATGGTCGGAGCTGTGTTTACGATGTCTATTTGGTTATAAGATTGGAAAGGGAGTTTGTTAATCATCATGGTAGTGATCAAGTTAGTCAGGAGATGA AGAGAGTTGTGAGGTTGATTGATGAGTACTTAAGGGAGATATCTCCTGATCATAACTTGAAGATGGCTAAGTTCATGGAGGTTGCTGAGAGCTTGCCAAT GGCTGCTAGGGAGAGCTTTGATGGAGTTTACAAAGCCATTGACATCTACCTTGAGACACATCGCAATCTTAACATGGAGGAGAGATCAAGACTGTGTGGA TGTCTCAACTTTGATAACGTATCAATGGAGTCATGTAAAGAGATGGTCAAGAACCCAAAGATCCCACCAAGCGTTTCAGTTCAAACCCTCATGTCTAAGA GATCTGCGGTCCCCAATTCAACCGATCGTGATCCATCTTTAACTCTGAGTAGGGTGAAATTAGGGAACATTGATCACGTGAGTGGATACTCGTGTAGTCC TTCAACAAAAGGGATGGCACATCAGTTACATAACGAATCAGATATGGATTCGGAGATGGAGATGAGCGTGGCGAGGATGCATAAGAGGGTTGTGGAGTTG GAGAGAAGTTGTAGGAAATTGTAG
AA sequence Show only first row Show all	>Lus10029070 pacid=23151716 polypeptide=Lus10029070 locus=Lus10029070.g ID=Lus10029070.BGIv1.0 annot-version=v1.0 MTEAVSAGNLLKQTEHFLRGIPSWSLSDVVSSVESCDSFFSYDKLVDLVERLISGVVAKISTSSVDSSSSESSSSTSADDMLLDQASLDDLLVTGNDNGN GDGRSCVYDVYLVIRLEREFVNHHGSDQVSQEMKRVVRLIDEYLREISPDHNLKMAKFMEVAESLPMAARESFDGVYKAIDIYLETHRNLNMEERSRLCG CLNFDNVSMESCKEMVKNPKIPPSVSVQTLMSKRSAVPNSTDRDPSLTLSRVKLGNIDHVSGYSCSPSTKGMAHQLHNESDMDSEMEMSVARMHKRVVEL ERSCRKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10029070 [exp]	0	1
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10018433 [exp]	4.8	0.7497
AT1G51990			O-methyltransferase family pro...		Lus10005268 [exp]	5.7	0.7348
					Lus10010827 [exp]	9.2	0.7212
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	10.6	0.7212
AT4G17260			Lactate/malate dehydrogenase f...		Lus10006030 [exp]	10.6	0.6845
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	11.8	0.7212
AT2G43620			Chitinase family protein (.1)		Lus10020338 [exp]	12.0	0.5652
					Lus10022511 [exp]	13.0	0.7212
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	14.0	0.7212
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017040 [exp]	14.8	0.6687

Compare expression of checked genes

Lus10029070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.