Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70710 816 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 782 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT4G02290 593 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 573 / 0 ATCEL2 cellulase 2 (.1) AT4G39010 563 / 0 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 522 / 0 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G22880 503 / 8e-176 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G71380 498 / 6e-174 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G11050 459 / 7e-157 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT4G23560 454 / 1e-156 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034199 [exp] 834 / 0 AT1G70710 758 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10008208 [exp] 612 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10018077 [exp] 575 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 570 / 0 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10038223 [exp] 567 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10027205 [exp] 552 / 0 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10027201 [exp] 535 / 0 AT1G23210 560 / 0.0 glycosyl hydrolase 9B6 (.1) Lus10001666 [exp] 520 / 0 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10025880 [exp] 510 / 4e-179 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G109200 [exp] 854 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 839 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.009G123900 [exp] 589 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.002G202400 [exp] 587 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.004G162200 [exp] 586 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.014G126900 [exp] 583 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.015G127900 [exp] 571 / 0 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 557 / 0 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.001G083200 [exp] 553 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.019G069300 [exp] 525 / 0 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10029071 pacid=23151861 polypeptide=Lus10029071 locus=Lus10029071.g ID=Lus10029071.BGIv1.0 annot-version=v1.0 ATGTCTACTCTCCGCGCCACAATCTTCCTCCTCTTTCTCGCCTTCTCCTCCGCCGCCGCCCACGACTACCACGAAGCTCTCCGCAAGAGCATTCTCTTCT TCGAAGGACAGCGCTCCGGCAAGCTTCCTCCCGACCAGCGCCTCAAATGGCGCCGTGACTCCGCCTTGCGCGACGGCTCCACCGTCGGGAGGGATTTGAC GGGAGGATACTACGACGCCGGAGACAACATCAAGTTCGGATTCCCGATGGCGTTCACCACCACGCTCCTCTCCTGGAGCGTGATCGACTTCGGGAAGACG ATGGGTCCCGAGCTGAAGAACGCTGTGGAAGCTGTACGGTGGGCGACGGACTACCTCTTGAAGGTGACGGCAGATCCCGGCGTCGTATACGTCCAGGTCG GCGACGCCTTCTCCGACCACAACTGCTGGGAGAGGCCGGAGGACATGGACACTCTCCGAACCGTCTTCAAAATCGACGGGGCCCACCCCGGATCCGACGT GGCAGGGGAAACCGCAGCCGCTCTCGCCACCCCCGCCGCTGCTCTTGCCGCTGCATCCATCGTTTTCCGGTCACGTGACCCTTCCTACTCCGCTGTCCTC CTCAATCGTGCCGTTAGGGTGTTCGAGTTTGCTGACAGGCACAGAGGAGCTTACAGCGGTAGTTTACACGCGGCTGTGTGCCCTTTTTACTGTGACAACA ACGGTTACCAGGACGAGCTGCTTTGGGGTGCGGCATGGCTGCACAAGGCGTCGAGGAGGAGGGTTTACAGAGAGTACATTATAAAAAACGAGGTCGTTTT GCACGCCGGAGATACGATCAACGAGTTCGGTTGGGATAATAAACACGCTGGCATTAACGTTCTACTTTCCAAGGAAGTGTTGATGGGAAGAGCAGACTAT TTCGAGAATTTCAAGCAGAATGCTCACGGGTTTATCTGTTCTTTATTGCCCGGAATCTCTCATCCTCAAGTCCAATATTCTCCAGGAGGGTTGATATTCA AGGCTGGAGGTAGCAACATGCAGCATGTAACTTCAATATCGTTCCTGCTTCTGGCTTACTCCAATTACATCAGCCATGCCAACAAGGCTGTCCCATGTGG CTCCCACTCTGCCTCCCCTGCTCTCCTCCGTCAGTTAGCCAAACGTCAGGTGGACTACATACTTGGAGACAACCCACTGAGGATGTCCTACATGGTAGGC TACGGTGAGCGTTACCCGCAGAGGATCCACCACAGGGGAAGCTCCTTACCGTCCGTCAAGGCTCACCCGGCCAAGATCCAATGCAAAGAGGGCTCACAAT ACTTCCTAAGCCCAAATCCGAACCCGAACCTGCTGGTCGGAGCTGTCGTCGGCGGGCCCAATGTTACGGATGCTTTCCCGGATTCGAGGCCCTTCTTCCA GGAGTCCGAGCCCACCACCTATATCAACGCTCCATTGGTGGGCCTGCTCTCTTACTTTACGGCCCATTCTTGA
AA sequence Show only first row Show all	>Lus10029071 pacid=23151861 polypeptide=Lus10029071 locus=Lus10029071.g ID=Lus10029071.BGIv1.0 annot-version=v1.0 MSTLRATIFLLFLAFSSAAAHDYHEALRKSILFFEGQRSGKLPPDQRLKWRRDSALRDGSTVGRDLTGGYYDAGDNIKFGFPMAFTTTLLSWSVIDFGKT MGPELKNAVEAVRWATDYLLKVTADPGVVYVQVGDAFSDHNCWERPEDMDTLRTVFKIDGAHPGSDVAGETAAALATPAAALAAASIVFRSRDPSYSAVL LNRAVRVFEFADRHRGAYSGSLHAAVCPFYCDNNGYQDELLWGAAWLHKASRRRVYREYIIKNEVVLHAGDTINEFGWDNKHAGINVLLSKEVLMGRADY FENFKQNAHGFICSLLPGISHPQVQYSPGGLIFKAGGSNMQHVTSISFLLLAYSNYISHANKAVPCGSHSASPALLRQLAKRQVDYILGDNPLRMSYMVG YGERYPQRIHHRGSSLPSVKAHPAKIQCKEGSQYFLSPNPNPNLLVGAVVGGPNVTDAFPDSRPFFQESEPTTYINAPLVGLLSYFTAHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10029071 [exp]	0	1
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	2.4	0.9370
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	8.7	0.9122
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10041746 [exp]	9.5	0.8871
AT3G18800			unknown protein		Lus10020872 [exp]	11.2	0.9091
AT1G68400			leucine-rich repeat transmembr...		Lus10035138 [exp]	14.7	0.9080
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10034881 [exp]	17.4	0.8930
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10004328 [exp]	19.5	0.8771
AT5G62710			Leucine-rich repeat protein ki...		Lus10036672 [exp]	22.5	0.8883
AT4G10890			unknown protein		Lus10001812 [exp]	24.0	0.8942
AT3G57830			Leucine-rich repeat protein ki...		Lus10021022 [exp]	25.1	0.8885

Compare expression of checked genes

Lus10029071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.