Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19830 745 / 0 NTMCTYPE5.2 ,NTMC2T5.2 ,NTMC2TYPE5.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G50260 726 / 0 NTMCTYPE5.1 ,NTMC2T5.1 ,NTMC2TYPE5.1 N-terminal-transmembrane-C2 domain type 5.1 (.1.2) AT1G20080 74 / 1e-13 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G04220 73 / 3e-13 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G14590 66 / 7e-11 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G53590 64 / 3e-10 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 61 / 1e-09 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT3G61050 59 / 6e-09 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G05500 54 / 2e-07 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G05330 50 / 2e-06 AGD13 ARF-GAP domain 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034197 [exp] 1129 / 0 AT3G19830 813 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 79 / 4e-15 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 77 / 2e-14 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10013563 [exp] 76 / 4e-14 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009226 [exp] 75 / 6e-14 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10017268 [exp] 75 / 7e-14 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040414 [exp] 72 / 9e-13 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10041396 [exp] 70 / 3e-12 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10005578 [exp] 70 / 3e-12 AT1G53590 812 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170300 [exp] 827 / 0 AT3G19830 752 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G085000 [exp] 807 / 0 AT3G19830 787 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 77 / 1e-14 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G072800 [exp] 76 / 4e-14 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.001G379800 [exp] 74 / 3e-13 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G038300 [exp] 72 / 8e-13 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.004G174600 [exp] 71 / 1e-12 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.005G241700 [exp] 69 / 4e-12 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G134200 [exp] 68 / 1e-11 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 67 / 1e-11 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0154 [flax] [poplar] PF10296 [flax] [poplar] MMM1 Maintenance of mitochondrial morphology protein 1
Representative CDS sequence Show only first row Show all	>Lus10029073 pacid=23151723 polypeptide=Lus10029073 locus=Lus10029073.g ID=Lus10029073.BGIv1.0 annot-version=v1.0 ATGATTCTGCAGTCTTCTCCTCCGGCTTTCGACTTCAACTCCTCGCTGGTTCTTCTGCCTCAGCTCTGTCCGTGTAGGAATCCGCCACAAGCAGTCGGGC ATCTATGTAATAGGAGGGGGAAGAGGCGGGTGAGCTTCAGGCGGGAACTCGGCTCTCGCGCTTGTGCTGTCCCTACTACCGATAGTTACAGTTACAGCAA CGTCAATGTAGATGAGCTAGCTAGCTCGGCGAGAAGAGGTGCTAAGAGCATCATTCTGAACCGGATTTCCAACGAGCTGCTGGAGGAAGATGAGGCTTCG TGTTCTACGAAGGAAATGGGATCCAATTTCACGGGGTTTCAACAGGATCCGATGGTGGATAAGTTGAGGACTCAGTTGGGGGTTATTCATCCTATCCCGT CGCCTCCCATCAATAGAAACATAGCCGGGTTGTTTGTTTTCTTCTTCTTTGTGGGTGTCATTTTTGATAAGTTGTGGACGGCTAGGAGGAGGAAGACTGG GAATGATGATAGCCAGCTTGGGGCATGGCCGCAGGTACCTACGAGCTTTTCGTTGTTCTTGGAGAAGGATTTGCAGAGGAAGGAATCAGTGGAGTGGGTG AACATGGTGTTGGGTAAGTTGTGGAAGGTGTACAGAGGTGGACTTGAGAATTGGTTAATGGGATTGTTGCAGCCGGTTATTGACGATTTGAAGAAGCCTG ATTATGTCGATAGAGTTGAGATTAAGCAGTTCTCCTTGGGGGATGAACCACTTTCTGTCAGGAATGTTGAGCGTAGGACCTCTCGCAGGGCGAATGATTT GCAGTACCAAATTGGCATCCGATATACCGGAGGTGCTCGGATGCTTCTGATGCTTTCCCTAAAATTTAGTGTTATCCCGATAATGGTGCCAGTAGGCATC CGTGACTTCGACATTGATGGTGAACTGTGGGTCAAATTAAGGTTGATACCAACAGAACCTTGGGTTGGAGCAGTTTCTTGGGCTTTTGTCTCACTCCCGA AGATCAAGTTTGAATTGTCTCCTTTCCGCTTATTCAACTTAATGGCTGCATTTTGTAGATTCTTGACAAAACTTCTCACCGTGGACTTGCCTCGACTATT TGTTCGTCCAAAGAAGATCGTTCTGGATTTTCAGAAGGGAAAATCAGTAGGCCCCGTGGCGGATGGTCTGCAAGCCGGAGAAACACAAGAAAAAAACAAG GATTTTGTTGGTGAATTATCAGTCACTGTTGTGGATGCTCGGAAACTTTCTTACCTTCTCTATGGTAAAACTGATCCATATGTTGTTCTAAGTCTCGGCG ATCAAACTATACGTAGTAAAAAGAACAGTCAGACGACAGTAATTGGACCTCCCGGTGAGCCAATCTGGAACCAGGATTTTCATATGCTTGTTTCGAACCC CAGGAGTCAAAAGCTGTTCGTCCAAGTCAAAGACTCTCTTGGATTCAGAGACTTGACCATTGGTAGTGCAGAGGTTGACTTGGTGTCCCTGAAAGACACT GTACCGACAGACAGGATCGTGGTCCTACAAGGAGGTTGGACCGTCTTCGGAAACGGGTCTACCGGAGAATTATTGCTTCGCTTAACATACAAAGCCTACG TCGAGGATGAAGAAGATGACAAAACCGAGTTGGACTCTGTTTACACCGACATGTCAGACGACGAGGCAGAATCCGACGAACCAGATGCAATCTTCGAGCC TAACGGAACCGATTTGTCAACCGGACCCGACAAAGAATCCTTCATGGACGTTCTCGCAGCTCTGATTGTGAGCGAGGAGTTTCAAGGGATCGTAACATCA GAGACTGGATATAATAACAGAGGTCCGGATGATGCGTCCAGTTCCGGTGCAACAAAGCTTCCAAGACCCTCGGGTACCGGCGCTGACTCCGCACCGCCCA ATTCCAACCAAAGTTCTGAAGGTTTACGATCTGTATTGCTGGGCCTTGCTGCCATTACGAGCATATTGGTGCTGATTACTCTGAGTAGCAGCGGTTCGAG TCTGTTCAACCCTTAA
AA sequence Show only first row Show all	>Lus10029073 pacid=23151723 polypeptide=Lus10029073 locus=Lus10029073.g ID=Lus10029073.BGIv1.0 annot-version=v1.0 MILQSSPPAFDFNSSLVLLPQLCPCRNPPQAVGHLCNRRGKRRVSFRRELGSRACAVPTTDSYSYSNVNVDELASSARRGAKSIILNRISNELLEEDEAS CSTKEMGSNFTGFQQDPMVDKLRTQLGVIHPIPSPPINRNIAGLFVFFFFVGVIFDKLWTARRRKTGNDDSQLGAWPQVPTSFSLFLEKDLQRKESVEWV NMVLGKLWKVYRGGLENWLMGLLQPVIDDLKKPDYVDRVEIKQFSLGDEPLSVRNVERRTSRRANDLQYQIGIRYTGGARMLLMLSLKFSVIPIMVPVGI RDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKFELSPFRLFNLMAAFCRFLTKLLTVDLPRLFVRPKKIVLDFQKGKSVGPVADGLQAGETQEKNK DFVGELSVTVVDARKLSYLLYGKTDPYVVLSLGDQTIRSKKNSQTTVIGPPGEPIWNQDFHMLVSNPRSQKLFVQVKDSLGFRDLTIGSAEVDLVSLKDT VPTDRIVVLQGGWTVFGNGSTGELLLRLTYKAYVEDEEDDKTELDSVYTDMSDDEAESDEPDAIFEPNGTDLSTGPDKESFMDVLAALIVSEEFQGIVTS ETGYNNRGPDDASSSGATKLPRPSGTGADSAPPNSNQSSEGLRSVLLGLAAITSILVLITLSSSGSSLFNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10029073 [exp]	0	1
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	2.4	0.9275
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	3.5	0.9300
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10034197 [exp]	3.9	0.8830
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029602 [exp]	6.0	0.9202
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	6.5	0.9242
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10022218 [exp]	8.1	0.8345
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10006166 [exp]	9.4	0.8934
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	9.7	0.9066
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10023303 [exp]	12.6	0.8958
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	16.7	0.8966

Compare expression of checked genes

Lus10029073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.