Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11920 671 / 0 glutaredoxin-related (.1) AT4G08550 266 / 2e-79 electron carriers;protein disulfide oxidoreductases (.1) AT3G13000 103 / 6e-23 Protein of unknown function, DUF547 (.1.2) AT2G23700 99 / 2e-21 Protein of unknown function, DUF547 (.1) AT5G66600 96 / 3e-20 Protein of unknown function, DUF547 (.1.2.3.4) AT1G16750 95 / 3e-20 Protein of unknown function, DUF547 (.1) AT5G42690 91 / 5e-19 Protein of unknown function, DUF547 (.1.2.3) AT4G37080 87 / 1e-17 Protein of unknown function, DUF547 (.1.2.3) AT5G47380 84 / 9e-17 Protein of unknown function, DUF547 (.1) AT5G60720 84 / 1e-16 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034196 [exp] 1181 / 0 AT3G11920 688 / 0.0 glutaredoxin-related (.1) Lus10012909 [exp] 875 / 0 AT3G11920 659 / 0.0 glutaredoxin-related (.1) Lus10030563 [exp] 804 / 0 AT3G11920 583 / 0.0 glutaredoxin-related (.1) Lus10033328 [exp] 105 / 3e-23 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 97 / 1e-20 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10016786 [exp] 97 / 1e-20 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10034787 [exp] 96 / 4e-20 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10022480 [exp] 94 / 8e-20 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10016114 [exp] 83 / 2e-17 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144800 [exp] 811 / 0 AT3G11920 707 / 0.0 glutaredoxin-related (.1) Potri.010G097600 [exp] 810 / 0 AT3G11920 708 / 0.0 glutaredoxin-related (.1) Potri.002G091200 [exp] 412 / 6e-134 AT4G08550 637 / 0.0 electron carriers;protein disulfide oxidoreductases (.1) Potri.007G003900 [exp] 106 / 8e-24 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.005G130000 [exp] 97 / 1e-20 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.006G216800 [exp] 96 / 2e-20 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.001G157200 [exp] 96 / 2e-20 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G033100 [exp] 92 / 3e-19 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 88 / 6e-18 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 88 / 7e-18 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00610 [flax] [poplar] DEP Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) CL0123 [flax] [poplar] PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547 CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10029074 pacid=23151652 polypeptide=Lus10029074 locus=Lus10029074.g ID=Lus10029074.BGIv1.0 annot-version=v1.0 ATGGAATTAACCAACGGAAATGCACCGCCGCAGCATCTCGCCGAGAAAGCCTATGCGGTTCAGTCGGAGGAGGAGGTTAGAGGAGGTACCGAGGTAATTG ATTTAAATTGCAACGGCAGCGGCGGCGAAAACAGAGGAGGAGTGAGCAATAACGACGCTGATCAGGTAGCTGAAGCGACGAAAACGGAAACCGCGGATGA GGCGGAGGCGGTTGAGAATCATGACGATCGTGATTCTGATGATACTACATCCTCAACTAGTAGTAGTACTACTGTCGACGGCTATATACAGGCGGTTTCT CCACACTCTCAGCTTCCCAAGCCAGAGCCGCCGCCAGGTCTCTCGCCTCCTGATCCGGCGCCTGCTGCTAATAAGGGAAACGAATTCGCCGGGATTCGCG CCGATTTGCTAGGGCGGTCGAAATCACTAACGGAAACCTTAGCGGCCGTCGAGATGCCGTCGATCGGGAGCTTCTTCAAGGAGAGGAGCAACAGCTTATC CGCAATCGCCAAGCGATTGAGCCGAATCGGAGATTTCAAGAACGACGACGTTGAGAAAAGCCCGTCGTCGCTCAAGAGCAAGAATAACGAAGAGTCCGAT CAATTCGACGTGTCGGAGTACAACATATCGGGGCTCAAAGTCGTCGTACGGATGAAGAGCGACGAAGCGATCAAGGGACGAATCAACTTCTTCTCCAGGT CGAACTGCAGGGACTGCTCCGCCGTCCGCTCGTTTCTGAAACAGAGAGGTCTCCGATTCGTGGAAATCAACGTCGACGTGTATCCGCAGAGGGAGAAGGA ACTGATCGAGCGGACGGGGAAATCTCAGGTCCCGCAGATTTTCTTCAACCAGAAGCTATTCGGCGGACTCGTTGCTTTAAATTCGCTGAGGAACAGCGGC GAGCTGGAGGCGAAATTGAAGGAGATGTTGGGGAAGGCCTGCCCCGGTGATGCGCCTGCTCCGCCGGTGTACGGATTCGACGATCAGGAAGAGGAGGAGG AAGGGGAGACGACGAAGGAGGAGATGGTGGGGACCGTAAAGGTGTTGAGGCAGAAGCTGCCGATTGAGGACCGGCTGGTGAAGATGAAGATCGTTCGGAA TTGCTTCACCGGAGCTCAGATGGTTGAGGTGTTGATTCAACACCTGGATTGTGGCCGGAAGAAGGCTGTCGAGATCGGTAAGCAGCTAGCCAGGAGGCAC TTCATCCATCATGTATTCGGGGAGAATGAGTTCGAAGATGGGAATCATCACCTGTACCGTTTCCTGGAGCACGAACCGTTCATCTCCAAGAGCTACAACT TCCGGGGAACAACAAACGACCGCAACCCAAAACCTGCAGTTGCCGTCGGGGAAAGGCTGTACAAAATAATGTCAGCAATTCTCGAATCTTACGCTTCCGA CGACAGAAGACACGTCGACTATACTTCCATCAGCAAAACAGAGGAATTCCGCAGGTATGTGAACCTGGTGGAGGATCTGCAGAGAGTGGATATGGTGGGA ATGAGTGATGATGAGAAAACGGCATTCTTCTTGAACTTGTACAACGCCATGGTTATACATGCTGTGATCAGAGTGGGTGGCCCGGAAGGGGCGACCGATA GGAGATCGTTCTACTCTGATTTCGTGTACATAGTTGGAGGATTGGCCTACTCTCTCAACGCCATCAAGAACGGCATTCTGAGGAACAACCGACGATCGCC TTACTCGCTGATCAAGCCCTTTGGGTCCAGAGACAAACGCTTAGAGATTGCGGTGGACAAAGTGAACCCATTGATCCATTTCGGCCTATGCAACGGGACG AAATCGAGCCCCGCGGTGAGGTTCTTCACGGCACAAGGGCTGCAGGCCGAGCTGAGAAATGCAGCAAGAGAGTTCTTCCAGACATCAGGCGGGATCGAAG TCGACTTAGAGACAAGGACCGTCCACCTCTCTCGTGTCATGAAGTGGTTTGGGGGTGACTTTGGGCAAGAGAAGGAGATAGTGAAATGGGTGATGAGTTA CTTGGACGGCAACAAGGCTGGACTCGTTACTCATCTGTTGTCCGATGGAGGTGCAGTTCACGTTGTGTACCAAAGCTACGAATGGTCTCTCAATTCTTAG
AA sequence Show only first row Show all	>Lus10029074 pacid=23151652 polypeptide=Lus10029074 locus=Lus10029074.g ID=Lus10029074.BGIv1.0 annot-version=v1.0 MELTNGNAPPQHLAEKAYAVQSEEEVRGGTEVIDLNCNGSGGENRGGVSNNDADQVAEATKTETADEAEAVENHDDRDSDDTTSSTSSSTTVDGYIQAVS PHSQLPKPEPPPGLSPPDPAPAANKGNEFAGIRADLLGRSKSLTETLAAVEMPSIGSFFKERSNSLSAIAKRLSRIGDFKNDDVEKSPSSLKSKNNEESD QFDVSEYNISGLKVVVRMKSDEAIKGRINFFSRSNCRDCSAVRSFLKQRGLRFVEINVDVYPQREKELIERTGKSQVPQIFFNQKLFGGLVALNSLRNSG ELEAKLKEMLGKACPGDAPAPPVYGFDDQEEEEEGETTKEEMVGTVKVLRQKLPIEDRLVKMKIVRNCFTGAQMVEVLIQHLDCGRKKAVEIGKQLARRH FIHHVFGENEFEDGNHHLYRFLEHEPFISKSYNFRGTTNDRNPKPAVAVGERLYKIMSAILESYASDDRRHVDYTSISKTEEFRRYVNLVEDLQRVDMVG MSDDEKTAFFLNLYNAMVIHAVIRVGGPEGATDRRSFYSDFVYIVGGLAYSLNAIKNGILRNNRRSPYSLIKPFGSRDKRLEIAVDKVNPLIHFGLCNGT KSSPAVRFFTAQGLQAELRNAAREFFQTSGGIEVDLETRTVHLSRVMKWFGGDFGQEKEIVKWVMSYLDGNKAGLVTHLLSDGGAVHVVYQSYEWSLNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11920			glutaredoxin-related (.1)		Lus10029074 [exp]	0	1
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10019711 [exp]	3.3	0.9256
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	6.5	0.9102
					Lus10021373 [exp]	7.9	0.9164
					Lus10033897 [exp]	8.5	0.9083
AT1G24405			unknown protein		Lus10037061 [exp]	14.7	0.9058
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10021696 [exp]	15.4	0.8736
AT4G02830			unknown protein		Lus10042573 [exp]	18.5	0.9016
					Lus10034812 [exp]	19.4	0.8903
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	21.4	0.8892
AT1G03700			Uncharacterised protein family...		Lus10011179 [exp]	22.8	0.8891

Compare expression of checked genes

Lus10029074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.