Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10820 240 / 1e-79 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT1G60670 236 / 1e-77 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT3G07565 187 / 1e-58 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) AT1G68160 163 / 6e-49 Protein of unknown function (DUF3755) (.1) AT2G43470 80 / 7e-18 Protein of unknown function (DUF3755) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013072 [exp] 450 / 2e-161 AT1G60670 250 / 6e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10030566 [exp] 362 / 1e-126 AT1G60670 239 / 1e-78 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10012911 [exp] 341 / 1e-117 AT1G60670 228 / 2e-73 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10027045 [exp] 127 / 1e-33 AT2G43400 228 / 1e-71 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1) Lus10025582 [exp] 87 / 1e-20 AT3G07565 160 / 3e-50 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10025581 [exp] 85 / 7e-19 AT3G07565 155 / 2e-46 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10027044 [exp] 50 / 1e-07 AT3G07565 116 / 2e-33 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145100 [exp] 343 / 6e-119 AT1G60670 251 / 4e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Potri.010G097000 [exp] 334 / 2e-115 AT1G60670 243 / 1e-79 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Potri.014G197300 [exp] 175 / 7e-54 AT3G07565 330 / 7e-115 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.017G023300 [exp] 172 / 9e-53 AT3G07565 264 / 3e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.007G132700 [exp] 171 / 2e-52 AT3G07565 265 / 1e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12579 [flax] [poplar] DUF3755 Protein of unknown function (DUF3755)
Representative CDS sequence Show only first row Show all	>Lus10029076 pacid=23151846 polypeptide=Lus10029076 locus=Lus10029076.g ID=Lus10029076.BGIv1.0 annot-version=v1.0 ATGGAGGGTTTGGGGTCTGCGGTATCTTTTAATTGTACTAGTACTTCGGAGATGGTACCGATGGGGACTTACTTTGGGATGAGTAGTAATTGTACTAGTT CGATGGGTATGGTGATGCCACCTTGCAACTCTCCTGGTTCTTCTTCTTCTCTGCTTTTGGAATCGGTTCCTTCTTCTTTCAAACATGATACAGGTTTGGC CGTTGATTGGTCTGTTGAAGAGCAGTACAGATTGGAAGAGGGTCTTCAAAAATATTCAGACGAACCAAGTATAATGAGATACGTGAAAATCGCAGCCAGT TTACCCGACAAAACAGTTCGAGATGTCGCGTTGAGATGTAGATGGATGACGCGAAAGCGGCGAAAACCTGATGACTACAATGCTGGCAGGAAAGCCAACA ATAGAAAGGATAAACTTGCGGAATCGTCATCAAAGATGAATACGTTGCCTTCACCTCTGGGACAGAACTTGTCAGTCTACCCTCTCATGATGCAGAACAT GAACCAAACTGGATCTTTGCCTTTCCAAGGGATTAGTGGTACATCTAGGCATCTCTTGGAGCAGAATATTGAAGCTTTCAGACAAATTTCAGCTAATCTT TCATCATTCAAGTTTCAAGATAACATCGATCTGTTCTGTCGCACAAGGAACAACATCACCGCGGTATTGAACGACATGAGCGGGATGCCCGGTATAATGA GCCATATGCCGCCACTACCCGTGTCTCTAAACGATGATCTGGCAAATAGTTTATTGCCTAGTACAACTCAGTCGATGATGTTCGGGTTGCCTAGCGGTAT GCAGTTAAAGCAAGAGCCGAGGTGCTAG
AA sequence Show only first row Show all	>Lus10029076 pacid=23151846 polypeptide=Lus10029076 locus=Lus10029076.g ID=Lus10029076.BGIv1.0 annot-version=v1.0 MEGLGSAVSFNCTSTSEMVPMGTYFGMSSNCTSSMGMVMPPCNSPGSSSSLLLESVPSSFKHDTGLAVDWSVEEQYRLEEGLQKYSDEPSIMRYVKIAAS LPDKTVRDVALRCRWMTRKRRKPDDYNAGRKANNRKDKLAESSSKMNTLPSPLGQNLSVYPLMMQNMNQTGSLPFQGISGTSRHLLEQNIEAFRQISANL SSFKFQDNIDLFCRTRNNITAVLNDMSGMPGIMSHMPPLPVSLNDDLANSLLPSTTQSMMFGLPSGMQLKQEPRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10820			Protein of unknown function (D...		Lus10029076 [exp]	0	1
AT3G14250			RING/U-box superfamily protein...		Lus10026104 [exp]	2.8	0.6811
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	4.5	0.7338
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	13.0	0.6472
					Lus10031119 [exp]	19.4	0.5740
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	19.5	0.6766
AT1G20460			unknown protein		Lus10034569 [exp]	37.8	0.5660
AT2G31820			Ankyrin repeat family protein ...		Lus10008329 [exp]	39.5	0.6046
AT4G33940			RING/U-box superfamily protein...		Lus10027921 [exp]	43.1	0.5937
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	45.5	0.5934
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	51.1	0.6395

Compare expression of checked genes

Lus10029076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.