Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 61 / 5e-10 F-box/RNI-like superfamily protein (.1) AT3G59250 56 / 2e-08 F-box/RNI-like superfamily protein (.1) AT3G58940 51 / 1e-06 F-box/RNI-like superfamily protein (.1) AT2G39415 47 / 2e-06 F-box family protein (.1) AT3G49150 50 / 3e-06 F-box/RNI-like superfamily protein (.1) AT3G59200 50 / 3e-06 F-box/RNI-like superfamily protein (.1) AT2G04230 47 / 2e-05 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G58930 46 / 4e-05 F-box/RNI-like superfamily protein (.1) AT3G49020 45 / 5e-05 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G22610 45 / 5e-05 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013071 [exp] 531 / 0 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10004852 [exp] 135 / 6e-35 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 127 / 1e-32 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10034418 [exp] 126 / 2e-31 AT1G13570 148 / 1e-38 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 122 / 1e-30 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10029079 [exp] 99 / 9e-22 AT1G65440 1451 / 0.0 global transcription factor group B1 (.1.2.3) Lus10003016 [exp] 85 / 6e-18 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 69 / 2e-12 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 66 / 5e-12 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G107600 [exp] 72 / 1e-13 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 72 / 2e-13 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G121400 [exp] 59 / 2e-09 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G121500 [exp] 59 / 3e-09 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.014G163866 [exp] 57 / 8e-09 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.014G039700 [exp] 57 / 1e-08 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 54 / 1e-07 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 51 / 1e-06 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104100 [exp] 50 / 1e-06 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 50 / 2e-06 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029077 pacid=23151678 polypeptide=Lus10029077 locus=Lus10029077.g ID=Lus10029077.BGIv1.0 annot-version=v1.0 ATGGTCAGTTCAACTTCTCTAGATTTCTCCATCAATGGCCGCCGTCGCCGTAGTAGTATCGCACCAAAAGATAGATTGAGTAACCTGCCCAATTGCTTAA AGGAGCACATCCTTACATTTCTGCCGCTGCGGGATGCAGCCAGGACTTGCGTTTTGTCGACTGCTTGGTCCCATACATGGGAAAATCGTTCTTCGCTTGC GTTCGATTCCGATTTCACGCATCATTACACCCTCCATGGTGGCGACTGGGACAAATGGTTGCTGGCCGTCCACAAAGCGATGCGCTCCCGCCGTGGACCC TTGAAGGAATTCTCACTCTTTGCGCCTTTTGCTCTACGCGGTCTTAGCATCGGCAAGATTCATCAGATTTTCCGCGTCTTGAACGACATCGAGAGCTTAC ACGTTGAGATTTTCAACTACCGAATCACCAAGCGTCATTTTGCTTCGCTTGCGAAACTGAAGAAGCTGAGTCTGTGTAACGTTATGTTGCCCCAGACTTC GAAAAATCAACTTTCATTCGAGGGATTCAGAGTGCTAACTGTTATTGTGTTTAACAGTGTAGCGATTCGGGGCCAACCAGACTCTGTACTCTTTAAGTGT CCAATGCTCTCTGCTTTGACCCTGGACAGTTTTGGTCATAATGTCAAGTACTTATTTGAAATCCTGATTGAAGCACCTCAGCTCGTATTCTTCCACTTTG TCGGGGAAGTTGCGACCCTCTGGCTTAAGTCTACTCCTCTTCTCGGGAACGTTAAACTCACTCCTTTAGATAGTTGTACTGGAGAACTTGAAAGGTTCAA CAAAGTTTTTGGAGGTCTTTCCATGGTGGAGTCACTTACCGTATCTGTTTCCATTTACTGTATGAACTGCTTCGGGTTGTACCCTAAAGAGCCAAATGAT GGTACTACTGCATCTTCCGAACTCAGAAGAATAATGAAGGAGCTTGATGACCAGAAGTACAAGTTGATGCTACTTGAGAAAGTGGAAATCAGTGAGTTCA CAGGAACAGAAACAGAGATGGCATTCATCGGAATCCTGCTTGCAATTTCACCGTCTCTCCAACGCATGGAACTGAATCTGTTAACATCTGGAGATTTGTC TGTTGATATTAATAAGGTGCTATTCGTCGCCGAATTGTTTGAATTCCCCCGCGCATCGACCAGCGCAACTATATCGATGAAAGCTCTAAAACGAAACGAT ACACACAGTACTTGTCCATGTAAGTAG
AA sequence Show only first row Show all	>Lus10029077 pacid=23151678 polypeptide=Lus10029077 locus=Lus10029077.g ID=Lus10029077.BGIv1.0 annot-version=v1.0 MVSSTSLDFSINGRRRRSSIAPKDRLSNLPNCLKEHILTFLPLRDAARTCVLSTAWSHTWENRSSLAFDSDFTHHYTLHGGDWDKWLLAVHKAMRSRRGP LKEFSLFAPFALRGLSIGKIHQIFRVLNDIESLHVEIFNYRITKRHFASLAKLKKLSLCNVMLPQTSKNQLSFEGFRVLTVIVFNSVAIRGQPDSVLFKC PMLSALTLDSFGHNVKYLFEILIEAPQLVFFHFVGEVATLWLKSTPLLGNVKLTPLDSCTGELERFNKVFGGLSMVESLTVSVSIYCMNCFGLYPKEPND GTTASSELRRIMKELDDQKYKLMLLEKVEISEFTGTETEMAFIGILLAISPSLQRMELNLLTSGDLSVDINKVLFVAELFEFPRASTSATISMKALKRND THSTCPCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10029077 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	3.9	0.8563
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	10.1	0.8030
AT4G10925			Nuclear transport factor 2 (NT...		Lus10001815 [exp]	11.8	0.7477
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10026522 [exp]	13.4	0.7834
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10003966 [exp]	17.1	0.7827
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10040571 [exp]	17.7	0.7883
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10029774 [exp]	19.0	0.7828
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	21.8	0.7843
AT5G65530			Protein kinase superfamily pro...		Lus10035949 [exp]	26.5	0.7596
AT1G15220		ATCCMH	cytochrome c biogenesis protei...		Lus10027231 [exp]	30.5	0.7460

Compare expression of checked genes

Lus10029077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.