Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65440 1368 / 0 GTB1 global transcription factor group B1 (.1.2.3) AT1G63210 1187 / 0 Transcription elongation factor Spt6 (.1) AT2G04230 62 / 2e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT2G39415 52 / 1e-07 F-box family protein (.1) AT1G66310 55 / 3e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G13570 54 / 4e-07 F-box/RNI-like superfamily protein (.1) AT5G53840 54 / 8e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G67390 52 / 3e-06 F-box family protein (.1) AT1G66290 51 / 4e-06 F-box/RNI-like superfamily protein (.1) AT5G02910 50 / 5e-06 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011344 [exp] 1754 / 0 AT1G65440 1946 / 0.0 global transcription factor group B1 (.1.2.3) Lus10003130 [exp] 1741 / 0 AT1G65440 1938 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029085 [exp] 758 / 0 AT1G65440 761 / 0.0 global transcription factor group B1 (.1.2.3) Lus10034231 [exp] 502 / 1e-161 AT1G65440 426 / 2e-133 global transcription factor group B1 (.1.2.3) Lus10029034 [exp] 467 / 2e-153 AT1G65440 404 / 2e-130 global transcription factor group B1 (.1.2.3) Lus10013071 [exp] 154 / 5e-38 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10029077 [exp] 98 / 5e-21 AT1G13570 82 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10034418 [exp] 96 / 9e-20 AT1G13570 148 / 1e-38 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 86 / 1e-16 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029200 [exp] 1516 / 0 AT1G65440 1961 / 0.0 global transcription factor group B1 (.1.2.3) Potri.006G031900 [exp] 1486 / 0 AT1G65440 1982 / 0.0 global transcription factor group B1 (.1.2.3) Potri.001G034300 [exp] 926 / 0 AT1G65440 1251 / 0.0 global transcription factor group B1 (.1.2.3) Potri.014G039700 [exp] 63 / 1e-09 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 61 / 3e-09 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 60 / 9e-09 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 56 / 1e-07 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 56 / 2e-07 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.010G134200 [exp] 55 / 3e-07 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 53 / 9e-07 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029079 pacid=23151742 polypeptide=Lus10029079 locus=Lus10029079.g ID=Lus10029079.BGIv1.0 annot-version=v1.0 ATGCTCGGTTTGGCCAGGCCATCATACAGAGATGTTGCAGTTCAACCTGAACACACAGACATGAACATGGATGATCCAGTTGCTGACGAAGTAGACAGAC TGAGTAACCTGCCAAATAACTTAATTGAGCACATCCTTGCATCCCTCCCGTTGCGAGAGGCTGCGAGGACTTGTGTCTTGTCGACTGCATGGTCCAACAA ATGGCAGACCGGCCCTTCACTTGCGTTCGACAAAAGCTTCACCCAACTATACACTGATGATAACGGCAATGTCAAGGACAGCAAGAAACGGTTGCTGTTG GACGTCTTCAAGGTATTGAGCTCCCACAGTGGACCCTTGACCGAATTTTGCTTCGCTGCTACTCCGATACTGGGAAGACAAGTTTCCGCAGATCAAATTG ATCAATCTACAGCCTTGGACATATATGGAGACAGAAGAATCGAAACTCACGACATGCAGTTCGACAACGAGGACAGGGAGTCTGAGCAAGGACGACGACG AGGTATTTCTGACGAGGAGGAGGAAGAAGAAGAAGGGCAGGACGAGTATGAAAAGGATGATTTTATAGTGGACGACGATCTTGAAGAAGAAGAAGAAGAG ATTGCGGATAGTGATGAGGAGAGGCAGAGGAAAAAGAAGAACAAGAAGAAGAAAAGAGAGCGTGAGGTCCTACTCGATGATGAAGACTACGAGCTTCTAG TGGATAATAATGCCATCCCCCGCAGACCACAGGATAGCAAGAGGTTATTTAAAAGGCTTAAAAAGGCTCAACCGGATACAGATGGCGATGGGACGAATGA GTTTTCAGACGAGGGACAGTTTGATGGAAGTGGTACTGCCGAGGAAAAAATCAAGCGCAGCTTATTTGGTGATTATGAAGGTAACAATCTAGAGGATATT GCTGAAGAAGAGGAACTCGTAGAAGAGGATGAGGAGAAGGAATATGTTGAAGTCGCGGATGAGGATGATGAGATGGCAGATTTCATTGTTGATGAAGAAG AAATCATTGAGAATGGACTTCCCGTTAGGCGTAAGAAGTCAAGGCGAGCATCAAGTGCTTCTTTGCAAGAAGCTCGTGAAATATTTGGTGATGTCAATGA GCTCTTACAGCTGCGTAAGCAAAAAGGATTTGATCCTCCTAGTGCACAGATGGAAAAAAGGCGATTGGAAGACGAATTTGAGCCGACAATACTTGCTGAG AAATACATGACTGAGAAAGATGATGCCATTCGACAAACCGACGTTCCTGAAAGAATACAGATACTACAGGAGGCTACGAGTTCGACTTCGGGTAATGCAT ACAATTTAGATGATGAGAGCACATGGATATATAATCAGCTAGCAAGTGGTGTTGCATCTCTACCGGGTTTGGCCATCAAATCCATCAAGATTGACGAGAT TCGCCAGTTTTTGGAGTTTCACCATGTGCAGAAGTTAGATATCCCTTTCATTGCCACATACAGGAAGAGTGAGTGTTCTAGCCTGTTCAAAGATCACGAC AATGAAGATAGCGATGATCAACCGCCAAATTTGAAGTGGCATAAGGTGCTTTGGGCCATTCAGGACTTGCACAGGAAGTGGCTACTTCTCCAAAAGAGGA AGAGTGCTCTCCTCTTGTACTACAACAAACGATTTGACAAAGACTCTATTCAGATTTATGACCAAACGATACTAGAGGCTGCCGAATCAGAACGAGAGGT TGATGACGTTGATGCCCAGTTTAACTTGCGCTTCGGTCCTTGTGCCAGTGAAGGACAATATAAAAGACCTGGAAGGAGATCTAAATTTAGTGCCTGCATT AAGGCCGGTCTGTGGGAAGTTGCCAGTAAGTTTGGCTGTAGCGCTGAGCACCTCGGACTCTACTTGTCCCTGATAGAGACGGGTAATGAATTGGAGGATG CCAAGGAAGCACCTCTTGAGATGGCTTCAAACTTTACATGTGAGGTGTTTAAATCTCCAGAGGATGTTCTTAAAGGGGCCAGGGATATGGCTGCTGTAGA GATAGGTTGTGAGCCGTATGTTAGGAAACATGTTCGTGCTGCTTACATGGAGAATGCAGTCGTGTCCACCACTCCAACTTCTGATGGCAACTCAATAATA GATTCTTTCCATCAGTTGATCGGAGTCAAACGTCTGGGTGAAAAGCTGGTATGCGAGTTCAAGGATGCACAGTGGCTTCTTATCCAAAAGGCTGAAGAGG AGAAGCTTCTTCAAGTAAACATTAAGCTTCCGGAAAAACGTATGAAGGAGTTGATGACCGAATGCGAGGATCATTATCTTAGCCATGGTGTCAGTAAATA CGCACAGTTATGGAATGAGCAAAGGCATCTAATTTTGCACGACGCTCTTTATGAGATTCTTATGCCCTCTATGGAGAAAGTCGCGAGATCACTGCTAACA AGTCGAGCCAAACGTTGGCTACTCTGGGAATATGGGCAAGCTTTATGGAATAAGATATCGGTCGGTCCATATCAAAGGGAAAAAAATGACCGCTCTGAAG CTGCACCGAGGGTCATGGCTTGCTGTTGGGGGCCTGGAAATCCTGCAACGACCTTTGTTATGTTGGATTCTGCTGGGGAGGTGCTGGACGTTCTTTATAC TGGTTCACTTACATCACGTTCTCACAATGTTGATGACCAGCAAAGGAAGACACATGATCAGCAGCAAGTTCTGAAATTTATGATGGATCATCAACCAAAT GTCGTAGTTCTCGGGGCTGCCAATTTGTCTTGTAAAAAACTCAAGGAAGAGATCTATGAGATCATTTTTAAGATGGTGGAAGAAAATCCGAGAGACGTGA GACACGATATGGACGAATTAAGCATTGTGTATGCAGACGAGTCTCTTCCACGCATTTACGAGAATTCCCGGATTTCTTCTGATCAACTACCTAAACATTC AGGAATCGTCAGAAGGGCGGTCGCTCTCGGACGCTACCTTCAAAACCCACTGGCAATGGCTGCGACTCTGTGCGGACCTGAAAGAGAGATCTTATCTTGG AAGCTCAATCCTTTAGACGAATTCCTGACGCCCGATGAAAAATACGCAATGGTTGAACAGGTTATGGTGGATGTCACAAACCAAGTCGGGCTCGACGTTA ATCTGGCTATAGCCCATGAATGGTTATTTGCTCTGCTGCAGTTTATATCCGGGCTTGGACCGAGTAAAGCAGCTTCTCTGCAGAGGTCTCTTGTAACAGC AGGAGGAATTTACACGAGGAAAGACTTTGTTACAGTCCATGGCCTCGGCAGAAAGGTGTTTGTTAACTCGGTTGGTTTCTTGCGACTTCGACGGAGTGGC CTGGCAGCTAGCAGCAATCAGTTTATTGATTTGTTAGATGACACTAGGATAAACCCCGAATCTTACGGCCTTGCTCAGGATTTGGCTAAAGATATTTACA AGCTTGATAATGCTGACGCGAATGATGACGAAGACGATCTTGAAATGTCGATTGAGCATGTTCGAGACCATCCCGCAAGGTTGAAAGCCCTGCATCTAGA TATCTATCTTAGGGACAAGGGCATGCTGTACAAAATGGAGACGTTTGAAGATATAAGACGAGAACTGCTACAGGGTTTCCAGGATCGGCGCAGACAGTAT GAAGAACCTAGCCATGAAGAAGAATTTTACATGATTTCTGGCGAAACTCAAGACACCGTAGCGGAGGGTAGAACGGTCCAAGCTACTGTCCGCAGGGTCG TGCCTGGTGTGAAAGCGATATGTTGTCTCGAATCTGGATTGACAGGGATACTTATGAGGCAAGACTATGGTGATACTTGTAAGTTGTTTGATAGGATCCA TGAAGGCGACATACTCGCGTGCAGGATAAAATCTATTGATATGAACAGATACCAGGTCTACCTAGCTTATTACCATGAAGATACGGTTAGCTTGCGTGAC AAGGAAAAGCCTCGTAAAGAGAAGCTGCTCGCAACAAAACAGGTTTTCAAACCAAGGATGATCTTGCATCCCCAATTCCAGAATATTACATCGGATGAAG CTATGCAGTTTTTGGCTGATATGGAGCCCGGGGAAAGCGTGATTCGTCCAAGTGTCCGTGGCCCCTCGTTTCTGAGTCTTACTTTGAAAGTTAGCAATGG AGTTTATGCGCACAAAGAGATAGTTGAAGGGGGTAAAGAGCACAAGGACATCACGAGTCTTCTACGCATCGGGAAGACATTGAAGATCGGGGAGGACAGT TTTGAGGATTTGGACGAGGTGATGGCTCGGTATGTCGATCCTCTTGTGGGTCACCTGAATCTATGTTGA
AA sequence Show only first row Show all	>Lus10029079 pacid=23151742 polypeptide=Lus10029079 locus=Lus10029079.g ID=Lus10029079.BGIv1.0 annot-version=v1.0 MLGLARPSYRDVAVQPEHTDMNMDDPVADEVDRLSNLPNNLIEHILASLPLREAARTCVLSTAWSNKWQTGPSLAFDKSFTQLYTDDNGNVKDSKKRLLL DVFKVLSSHSGPLTEFCFAATPILGRQVSADQIDQSTALDIYGDRRIETHDMQFDNEDRESEQGRRRGISDEEEEEEEGQDEYEKDDFIVDDDLEEEEEE IADSDEERQRKKKNKKKKREREVLLDDEDYELLVDNNAIPRRPQDSKRLFKRLKKAQPDTDGDGTNEFSDEGQFDGSGTAEEKIKRSLFGDYEGNNLEDI AEEEELVEEDEEKEYVEVADEDDEMADFIVDEEEIIENGLPVRRKKSRRASSASLQEAREIFGDVNELLQLRKQKGFDPPSAQMEKRRLEDEFEPTILAE KYMTEKDDAIRQTDVPERIQILQEATSSTSGNAYNLDDESTWIYNQLASGVASLPGLAIKSIKIDEIRQFLEFHHVQKLDIPFIATYRKSECSSLFKDHD NEDSDDQPPNLKWHKVLWAIQDLHRKWLLLQKRKSALLLYYNKRFDKDSIQIYDQTILEAAESEREVDDVDAQFNLRFGPCASEGQYKRPGRRSKFSACI KAGLWEVASKFGCSAEHLGLYLSLIETGNELEDAKEAPLEMASNFTCEVFKSPEDVLKGARDMAAVEIGCEPYVRKHVRAAYMENAVVSTTPTSDGNSII DSFHQLIGVKRLGEKLVCEFKDAQWLLIQKAEEEKLLQVNIKLPEKRMKELMTECEDHYLSHGVSKYAQLWNEQRHLILHDALYEILMPSMEKVARSLLT SRAKRWLLWEYGQALWNKISVGPYQREKNDRSEAAPRVMACCWGPGNPATTFVMLDSAGEVLDVLYTGSLTSRSHNVDDQQRKTHDQQQVLKFMMDHQPN VVVLGAANLSCKKLKEEIYEIIFKMVEENPRDVRHDMDELSIVYADESLPRIYENSRISSDQLPKHSGIVRRAVALGRYLQNPLAMAATLCGPEREILSW KLNPLDEFLTPDEKYAMVEQVMVDVTNQVGLDVNLAIAHEWLFALLQFISGLGPSKAASLQRSLVTAGGIYTRKDFVTVHGLGRKVFVNSVGFLRLRRSG LAASSNQFIDLLDDTRINPESYGLAQDLAKDIYKLDNADANDDEDDLEMSIEHVRDHPARLKALHLDIYLRDKGMLYKMETFEDIRRELLQGFQDRRRQY EEPSHEEEFYMISGETQDTVAEGRTVQATVRRVVPGVKAICCLESGLTGILMRQDYGDTCKLFDRIHEGDILACRIKSIDMNRYQVYLAYYHEDTVSLRD KEKPRKEKLLATKQVFKPRMILHPQFQNITSDEAMQFLADMEPGESVIRPSVRGPSFLSLTLKVSNGVYAHKEIVEGGKEHKDITSLLRIGKTLKIGEDS FEDLDEVMARYVDPLVGHLNLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65440		GTB1	global transcription factor gr...		Lus10029079 [exp]	0	1
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040801 [exp]	3.2	0.8290
AT1G65440		GTB1	global transcription factor gr...		Lus10029078 [exp]	3.5	0.7640
AT5G39380			Plant calmodulin-binding prote...		Lus10030701 [exp]	3.9	0.8048
AT3G13980			unknown protein		Lus10037659 [exp]	6.0	0.7878
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	9.1	0.8240
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	9.2	0.7843
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	11.5	0.7809
AT1G20225			Thioredoxin superfamily protei...		Lus10021843 [exp]	18.9	0.7024
AT5G17910			unknown protein		Lus10009544 [exp]	23.7	0.7770
					Lus10020368 [exp]	23.8	0.7759

Compare expression of checked genes

Lus10029079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.