Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 365 / 3e-126 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 279 / 2e-92 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT5G58660 171 / 3e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 171 / 7e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25420 161 / 4e-46 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 160 / 4e-46 ATJRG21 jasmonate-regulated gene 21 (.1) AT3G11180 161 / 5e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G07200 159 / 1e-45 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT3G47190 155 / 1e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 154 / 9e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013069 [exp] 628 / 0 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10030567 [exp] 575 / 0 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 569 / 0 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10007640 [exp] 372 / 9e-129 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 363 / 2e-125 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 357 / 1e-122 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10004808 [exp] 169 / 2e-49 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 162 / 1e-46 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10021002 [exp] 161 / 2e-46 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096800 [exp] 521 / 0 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 506 / 0 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G022800 [exp] 381 / 3e-132 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 373 / 2e-129 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 338 / 1e-115 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134000 [exp] 301 / 3e-101 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 293 / 7e-98 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 209 / 4e-65 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 177 / 2e-52 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G065400 [exp] 168 / 5e-49 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10029081 pacid=23151717 polypeptide=Lus10029081 locus=Lus10029081.g ID=Lus10029081.BGIv1.0 annot-version=v1.0 ATGATGCTAAAAACAAACCCACCTCTCCTTCACCATTACGAGCAGGTTTCGCGCCAGCTCGTTCTTCCTCCTCTTCCTGCCCTTGAACATCACCATGACC ACCCTCCTCCTGCTCTTGTTATGGAGGAATGTCAGCTGCCGCTGATAGACCTGAGCGGTCTGAGCAGCTGCGATGAGAGGGTGAGGGCAGACTGTGCAGC TTCTATATGCAGAGCCTCGTCCGAGTGGGGATTCTTTCAGGTGGTGAGCCATGGAATCCACCCGGAGCTGGTTAGTAAGATGAAGGAGGAGCAAGTGAAG CTGTTCCAATTGCCTTTTGATAAGAAGGTGAATAGTGGTCTTTTGAACAACTCTTACAGATGGGGGACGCCAACGGCTACCTGTCCAAAGCAGTTGTCGT GGTCCGAGGCTTTCCACGTTCCTCTATCCAAGATTTCACAGGAGGACTGCTACGGGGAGTTCACTTCTCTAAGGAAAGTGATGGTGGAATTCGCAGAAGC AATGTCCAAGCTAGCAGGAGTCCTGGCAGCGGTCTTAGCAGAAAACTTGGGATATTCAAGTGGGAATTTCGCAGACATCTGTCAAGAGAGCAGTTGCTTT CTTCGGCTGAACCGATATCCAGCTTGCCCGATGTCCCCGGAGATTTTTGGTTTAGTGCCTCATACTGACAGTGATTTTCTCACTATTCTGTCTCAAGATC AAGTAGGGGGGCTCCAACTCATGAAGGACTCCAGATGGGTGGCTGTAAAACCTAATCAAGATGCACTGATAGTAAACATTGGAGATCTTTTTCAGGCATG GAGTAACGATATTTATAAGAGCGTGGAACACAAGGTTATGGCAAATGCTAAGACAGAAAGATACTCCACGGCCTATTTTTTGTGTCCTTCATACGAGACA TCAATCGAGAGTTGCAGAGAACCATCCAAATACAGGAAATTCACCTTTGGAGAGTACAGGAGCCAAATCCAAGAAGATGTCAAGAAACATGGTCACAAAA TCGGCCTCCGAAGCTTTCGAACTGGACCGTGA
AA sequence Show only first row Show all	>Lus10029081 pacid=23151717 polypeptide=Lus10029081 locus=Lus10029081.g ID=Lus10029081.BGIv1.0 annot-version=v1.0 MMLKTNPPLLHHYEQVSRQLVLPPLPALEHHHDHPPPALVMEECQLPLIDLSGLSSCDERVRADCAASICRASSEWGFFQVVSHGIHPELVSKMKEEQVK LFQLPFDKKVNSGLLNNSYRWGTPTATCPKQLSWSEAFHVPLSKISQEDCYGEFTSLRKVMVEFAEAMSKLAGVLAAVLAENLGYSSGNFADICQESSCF LRLNRYPACPMSPEIFGLVPHTDSDFLTILSQDQVGGLQLMKDSRWVAVKPNQDALIVNIGDLFQAWSNDIYKSVEHKVMANAKTERYSTAYFLCPSYET SIESCREPSKYRKFTFGEYRSQIQEDVKKHGHKIGLRSFRTGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10029081 [exp]	0	1
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013069 [exp]	2.0	0.8373
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10017830 [exp]	5.8	0.7700
AT1G49000			unknown protein		Lus10032453 [exp]	7.9	0.8396
AT3G46450			SEC14 cytosolic factor family ...		Lus10005452 [exp]	10.7	0.7641
AT2G38600			HAD superfamily, subfamily III...		Lus10021380 [exp]	13.4	0.8145
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Lus10038888 [exp]	18.3	0.7953
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10014376 [exp]	19.3	0.8057
					Lus10031697 [exp]	27.4	0.7587
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	28.8	0.7887
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10006986 [exp]	29.7	0.7839

Compare expression of checked genes

Lus10029081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.