Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02920 54 / 6e-08 F-box/RNI-like superfamily protein (.1) AT5G56560 52 / 8e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G67390 50 / 3e-06 F-box family protein (.1) AT2G39415 46 / 6e-06 F-box family protein (.1) AT5G02930 48 / 2e-05 F-box/RNI-like superfamily protein (.1) AT1G80960 47 / 3e-05 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) AT5G03100 45 / 8e-05 F-box/RNI-like superfamily protein (.1) AT4G13985 45 / 8e-05 FBD1 FBD-associated F-box protein (.1) AT5G53840 45 / 9e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56440 45 / 0.0001 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037289 [exp] 353 / 2e-116 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10034430 [exp] 302 / 4e-100 ND / Lus10034290 [exp] 274 / 1e-86 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2) Lus10029003 [exp] 278 / 7e-86 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10037261 [exp] 236 / 9e-75 AT5G02920 65 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10003696 [exp] 159 / 1e-45 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10000650 [exp] 151 / 2e-41 ND / Lus10036905 [exp] 124 / 3e-33 AT5G22660 54 / 1e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Lus10003695 [exp] 100 / 2e-24 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099400 [exp] 64 / 2e-10 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104100 [exp] 52 / 6e-07 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 52 / 8e-07 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 51 / 1e-06 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 50 / 2e-06 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G098700 [exp] 50 / 3e-06 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G136200 [exp] 47 / 2e-05 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.015G002100 [exp] 47 / 3e-05 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.013G146800 [exp] 47 / 4e-05 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 46 / 4e-05 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029083 pacid=23151800 polypeptide=Lus10029083 locus=Lus10029083.g ID=Lus10029083.BGIv1.0 annot-version=v1.0 ATGGAATCATCACCCACCACCGTAGACCGGATCTCAAACCTACCTGATGAAATCATCTTCCTAATCCTTGCAAGCTTAGACTCTCACGAGTCAGCGGCCA GAACTTGCATCTTATCCAGAAGATGGCTTCATATCTGGCGCTCTTACCCTGCTGTTGACTTTCAGGATGATACCATAAATTTCCACAGATTCGTCATTGC CACTACCAAGAGGCTGCGGCTGGGGCTGCTTCATCAGAGAGCAGTGCCATTACTTTTAGACTCCTTCAGCATCAAACTGCCATTCTTAGAGTACACATAC GAGGATACTGATCTCGACCAGTTGCTATCATTAGCGATCGATGGTGGCCGCGACGATGGCAGCAGATCCCCGCTCAAGGTTGTGGTTAAAAATATAGACC TCAGTTTTTTCATTAAAGGAGCAACGTTTTCGAATTGCTGCCGCACCAAATTTCTCCACCTGAGAGGATGTGACCTAAGTGGATGGCGGCACAATTTCAA TAATCGTTTGGATAATCTCCAGGAAGTCACTCTGAATCATGTTCGACTTAGCAGAGAGAGTTTCCCGGGATGCCTGGCCGATGCTCCCCGTCTTGAGAAA TTGAGTTTGAGTATTATTTACGGGATTGATGCCCTCCATATCTCTGCTTCTGATTTTCCCAGCTTGAAATTTCTTTCCTTTGTCGGACCGCTGGATCCAG TCCGCCAGCTCGGCTCACCACCACCACCTCCCGTCCAGACAGGCGACAACTTATGTATGGTGCTGACTGTAGCTCCAGATGTAAAACTTATAAAGCTTGA ACTGTTGGGGCAATTTAAGCGCAGCGAACTTGAAGATATTATTTCAAAGATTCCATCTCTCGAGTCTTTCGAATTCAGTCTCCCTAGAAGATGCATCCTA GGGGAAGTTGGACTCAGAATTTCGGCTCGCATTCTACGGAAATTAACTTACTCCCATCAGTTTGAGGACGGAGCCAAGTTTGAGATTGATGCTCCAAATC TGGTAGATTTGTGCATTCGAATAATTGGGCTTCCAATCATGAACGTTATTAAAGTGGCTCCTAACTGTCGATGTTTAGTGGATTGCTATATCTGTGAAGA CAGCTTAACAACAGATTGGTTTATTGAGTTGAGGAAATGTCTCGCGACACTGGCTACTCAAATCCACCATCTGGTTTTCCAGTTAGAGTTCTGGGAAAGA ATGAAGGAGTCCATGTTTGATTTGAACCTAGTTGGATGTGAATCTTCTCCTCTAGCAGTACAACATTTACAAGTAGCAACTGACTTGGCTTTGGGAGTCT CTCACATAGAGAAACAAGTTCATCAAACTCTTCTTGATGGTCTCTTATGGACATGTCATCCGAAGAAGACATTATCCGTAGCTCGACTTTCAGATTCACC TCATGACAGAAGTCTATTCTCGATGGAAGCCTTGGCTGAGACTGGGTATTGGCCTCTATGGGAAAGGTATCTAAACCAGAGCCACCCATATATTACAGAG ATTGTGTCACCACTTACTTTGATCCGATTTGACGGATTCTCATGTACATGA
AA sequence Show only first row Show all	>Lus10029083 pacid=23151800 polypeptide=Lus10029083 locus=Lus10029083.g ID=Lus10029083.BGIv1.0 annot-version=v1.0 MESSPTTVDRISNLPDEIIFLILASLDSHESAARTCILSRRWLHIWRSYPAVDFQDDTINFHRFVIATTKRLRLGLLHQRAVPLLLDSFSIKLPFLEYTY EDTDLDQLLSLAIDGGRDDGSRSPLKVVVKNIDLSFFIKGATFSNCCRTKFLHLRGCDLSGWRHNFNNRLDNLQEVTLNHVRLSRESFPGCLADAPRLEK LSLSIIYGIDALHISASDFPSLKFLSFVGPLDPVRQLGSPPPPPVQTGDNLCMVLTVAPDVKLIKLELLGQFKRSELEDIISKIPSLESFEFSLPRRCIL GEVGLRISARILRKLTYSHQFEDGAKFEIDAPNLVDLCIRIIGLPIMNVIKVAPNCRCLVDCYICEDSLTTDWFIELRKCLATLATQIHHLVFQLEFWER MKESMFDLNLVGCESSPLAVQHLQVATDLALGVSHIEKQVHQTLLDGLLWTCHPKKTLSVARLSDSPHDRSLFSMEALAETGYWPLWERYLNQSHPYITE IVSPLTLIRFDGFSCT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67390			F-box family protein (.1)		Lus10029083 [exp]	0	1
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10025199 [exp]	2.8	0.7531
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	3.7	0.7891
AT3G57200			unknown protein		Lus10018036 [exp]	5.5	0.7588
					Lus10029084 [exp]	7.2	0.7680
AT5G14500			aldose 1-epimerase family prot...		Lus10032084 [exp]	13.0	0.7500
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	19.6	0.7508
AT3G26950			unknown protein		Lus10032012 [exp]	20.2	0.7141
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	26.5	0.7227
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	28.4	0.7100
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	37.1	0.7428

Compare expression of checked genes

Lus10029083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.