Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029084 pacid=23151648 polypeptide=Lus10029084 locus=Lus10029084.g ID=Lus10029084.BGIv1.0 annot-version=v1.0 ATGGGGAATAGTAGATCGAGGAGTGAGTGGCGGCATTCTAAACTCCTCTTCACCAGCTCTCGTCGGCTGTCTCCACATCTCAAATCCATCACCATCAACT CAGAAATCTACCTCCATAGAGGAAGGCAGGAAGCCCGTTTCATTAGCCGCAATCTGCCGCCACCCATCCCTCTTGCTCGTCGTCTCCGGCTACACTCCGC GCTAACCGCAGGCCAGCACTTGTTCATCGGTGCAAGCCCTCCAGCGGCGCTCAATCTTCAATCTCTCCTGGCTTCTTCCATCGTTTCAGCCCTTCTGCTA AGGAGTTTGAGAGTCTCCTTCTTCAGTCCGGCGGCGGCTCATTGTCTGGGCTTCCTTCCACCAATTTGTACGGTGGCGGAAATGAGGAGGCGGCAGAGGA GATCTCGAGATGGTAGTAGAAGCAGAGGGAAGATGTGA
AA sequence Show only first row Show all	>Lus10029084 pacid=23151648 polypeptide=Lus10029084 locus=Lus10029084.g ID=Lus10029084.BGIv1.0 annot-version=v1.0 MGNSRSRSEWRHSKLLFTSSRRLSPHLKSITINSEIYLHRGRQEARFISRNLPPPIPLARRLRLHSALTAGQHLFIGASPPAALNLQSLLASSIVSALLL RSLRVSFFSPAAAHCLGFLPPICTVAEMRRRQRRSRDGSRSRGKM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029084 [exp]	0	1
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	7.1	0.8203
AT1G67390			F-box family protein (.1)		Lus10029083 [exp]	7.2	0.7680
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	15.3	0.8095
AT5G54200			Transducin/WD40 repeat-like su...		Lus10027671 [exp]	15.4	0.8099
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	17.7	0.7900
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	18.5	0.7771
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	24.2	0.7872
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	24.3	0.8025
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	25.5	0.7855
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	26.1	0.7762

Compare expression of checked genes

Lus10029084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.