Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65440 743 / 0 GTB1 global transcription factor group B1 (.1.2.3) AT1G63210 691 / 0 Transcription elongation factor Spt6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003130 [exp] 855 / 0 AT1G65440 1938 / 0.0 global transcription factor group B1 (.1.2.3) Lus10011344 [exp] 851 / 0 AT1G65440 1946 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029079 [exp] 759 / 0 AT1G65440 1451 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029034 [exp] 343 / 2e-113 AT1G65440 404 / 2e-130 global transcription factor group B1 (.1.2.3) Lus10034231 [exp] 352 / 9e-112 AT1G65440 426 / 2e-133 global transcription factor group B1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029200 [exp] 780 / 0 AT1G65440 1961 / 0.0 global transcription factor group B1 (.1.2.3) Potri.006G031900 [exp] 776 / 0 AT1G65440 1982 / 0.0 global transcription factor group B1 (.1.2.3) Potri.001G034300 [exp] 541 / 4e-175 AT1G65440 1251 / 0.0 global transcription factor group B1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029085 pacid=23151766 polypeptide=Lus10029085 locus=Lus10029085.g ID=Lus10029085.BGIv1.0 annot-version=v1.0 ATGCCGGCGAAGGTGTCAGTGGACGGTGCTTTGCAAGAAGCCAGCGAAATTTTCGGTGATCCGAATAGGTTGATACAGCAGCGTAGGCTTACGCAAGCAC TGGGTTCCAATGAACCGAAGACATCGGAAGATTTGGAGCTACTTGAGAAGAACCGCAGGATTCTGAAAACCGACGAACCTGAAAGAAGCCAGGTGCATTG GGCTATTCAGGGTTTGGACCAGAAATGGTTACTTCTTCAAAACAGGAAGAATGCTCTCAAAAAGCACTACAAAGCAAGATATGAGCAAGAACAAACTAAT CAGAGATGCGGGAAGATTTTAGCTTCCATTATTAAGTCGCTTGAAGCTGTCAAATCAGAACAAGAGATTGATGATGTTACTGCAAAGTTTAACTTGCACT TCCCTCAGGGTCAGGTTACAGGACAATATAAGAGACCACCTACAAGGAAATCTGGATTGAGTCCCTCGATCAAGAGTGGTCTATGGGAAGTTGCCAGTAA GTTTGGTTGTAGTGCTGAGCAGCTCGGACTGCAATTGTCACAAACAGAGATACAAGTTGAGAAGTTGGAGGATGCTACAGGAGCGCCTGAAGAGATGGCT TCAAACCATATAACTGCTATGTTTAAAACTCCAGACGCTGTTCTTGAACAGGGCAGGCACATGGCTGCTCTTGAGATAAGTTGTGAGCCGTATGTTAGAA AATATGTCCGTGCTGCTTACATGGAGAATGCAGTCGTGTCCACCAGTCCAACTTCTAATGGCAACGTAACAATAGATGCTTTTCCTGAGTTTTTTAGAGT GAAATCTCTGCGTGAAAAGCCAGTATGTCAGTTCGAGGATGCACAATGGCTTCTTATCGAAAAGGCTGAAGAGAAAAAGGTTCTTCAAGTTACTTTGAAG CTTCCAGAAAAACGTATGGATCAGTTGATGACTGAATGCAAGAAGCATTATCTTAGTCACGGTGACAGTAAATCTGCCAAGTTATGGAACGAGCAAAGGC AACTAATTTTGCAGAATGCTCTTTTTGGTTTTCTTATGCCTTCTATGGAGAAAGAAGCGAGATCATTGCTAACAAGTAGAGCCAAACGCTCGCTACTCTG GGACTATGGGCAAGTTTTATGGAAAAAATTATCGGTCTGCCCATATCCAAGGAAGAAAAATGAACCCTCATCTGATGCTGAAGCTGCACCGAGGGTCATG GCATGCCGTTGGGGAGAATATACCACAACCATTGTTATGTTAGATTCGGTTGGGGAGGTGCTGGGCGTGCTTGAGATTGGGTCACTTACACTACGTTCTC AAAATGTTAATGACCAGAAAAGGAAGACAGATAATCAGCAGCTAGTTCTGGAATTTATGAAGCGTCATCAACCACATGTGGTCGCTCTAGAGGCTGACGA TTTCTCTTCTACAAAACTGAAGAAAGACATCTATGAGATCATTTCTAAGATGGTGGAAAAAAATCCCAGAGACGTGGGCGAATTAAGCATTCAGTATGTA GATGAGTCTCTTCCACGCCTTTATGTGCATTCCCAAATTTTTTCTGATCAGCAGCCTTCACTATCAGGAACTGTCAAAAAGGCTGTTGCTCTTGGACGCT ATCTTCAAAACCCGCTGGCAATGGCTGCAACTTTGTGCGGACCTCAAAGAGATATCTTATCTTGGAAGCTCCATTCTTTAGAGAACTTACTCACGGATGA TGAAAAGTATGCAATGGTTGAACAGGTTATGGTGGATGTCACAAACCAGGTTGGGTTTGATGTTAATCTGGCTATATGCAGCAAGTGGTTATTTGCTCCA CTGCAGTTTATATCTGGGCTTGGGCCAAGGAAAGCAGCTTTTCTGCAAAGGTCTCTTCTAAGAGCGGGAGAAATTTCCACGAGGACAGACTTTCATACAG TCCATGGCCTTGGCGAAAAGGTGTTGCTCAATGCAGATGGCTTTTTGCGAGTTCGACCGAGTGGCCTGGTAGCTAGCAGCAGTCAGCTTATTGATTTGTC AGACGACTTACGCAAACCTAGAAGCACATAA
AA sequence Show only first row Show all	>Lus10029085 pacid=23151766 polypeptide=Lus10029085 locus=Lus10029085.g ID=Lus10029085.BGIv1.0 annot-version=v1.0 MPAKVSVDGALQEASEIFGDPNRLIQQRRLTQALGSNEPKTSEDLELLEKNRRILKTDEPERSQVHWAIQGLDQKWLLLQNRKNALKKHYKARYEQEQTN QRCGKILASIIKSLEAVKSEQEIDDVTAKFNLHFPQGQVTGQYKRPPTRKSGLSPSIKSGLWEVASKFGCSAEQLGLQLSQTEIQVEKLEDATGAPEEMA SNHITAMFKTPDAVLEQGRHMAALEISCEPYVRKYVRAAYMENAVVSTSPTSNGNVTIDAFPEFFRVKSLREKPVCQFEDAQWLLIEKAEEKKVLQVTLK LPEKRMDQLMTECKKHYLSHGDSKSAKLWNEQRQLILQNALFGFLMPSMEKEARSLLTSRAKRSLLWDYGQVLWKKLSVCPYPRKKNEPSSDAEAAPRVM ACRWGEYTTTIVMLDSVGEVLGVLEIGSLTLRSQNVNDQKRKTDNQQLVLEFMKRHQPHVVALEADDFSSTKLKKDIYEIISKMVEKNPRDVGELSIQYV DESLPRLYVHSQIFSDQQPSLSGTVKKAVALGRYLQNPLAMAATLCGPQRDILSWKLHSLENLLTDDEKYAMVEQVMVDVTNQVGFDVNLAICSKWLFAP LQFISGLGPRKAAFLQRSLLRAGEISTRTDFHTVHGLGEKVLLNADGFLRVRPSGLVASSSQLIDLSDDLRKPRST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65440		GTB1	global transcription factor gr...		Lus10029085 [exp]	0	1
AT1G21550			Calcium-binding EF-hand family...		Lus10000972 [exp]	20.8	0.8309
					Lus10013980 [exp]	22.6	0.7521
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	36.7	0.8290
AT4G15760		MO1	monooxygenase 1 (.1.2)		Lus10028081 [exp]	81.7	0.8108
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	88.6	0.7844
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011748 [exp]	108.6	0.7769
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10041451 [exp]	108.9	0.7981
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10026386 [exp]	109.0	0.8018
AT5G12300			Calcium-dependent lipid-bindin...		Lus10009693 [exp]	119.0	0.7947
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10016674 [exp]	119.7	0.7928

Compare expression of checked genes

Lus10029085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.