Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10850 443 / 1e-159 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT2G31350 201 / 2e-63 GLX2-5 glyoxalase 2-5 (.1.2) AT1G06130 200 / 9e-63 GLX2-4 glyoxalase 2-4 (.1.2) AT2G43430 179 / 1e-54 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2) AT1G53580 89 / 2e-20 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034259 [exp] 534 / 0 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029004 [exp] 488 / 1e-177 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10017706 [exp] 204 / 2e-64 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10039860 [exp] 199 / 3e-62 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10033662 [exp] 163 / 5e-49 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10018625 [exp] 144 / 1e-41 AT2G31350 418 / 5e-148 glyoxalase 2-5 (.1.2) Lus10020760 [exp] 81 / 1e-17 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10007336 [exp] 63 / 3e-11 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062600 [exp] 470 / 2e-170 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.017G026500 [exp] 197 / 1e-61 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 182 / 9e-56 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2) Potri.005G204800 [exp] 90 / 4e-21 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.001G380100 [exp] 82 / 4e-18 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10029086 pacid=23151655 polypeptide=Lus10029086 locus=Lus10029086.g ID=Lus10029086.BGIv1.0 annot-version=v1.0 ATGAAGATTTTCCACGTTCCTTGCTTGGAAGACAACTACGCCTACCTGATTATCGACGAAGCAACTAGAGAAGCTGCTGTGGTGGATCCCGTCGAGCCAG AGAAGCTGGTGAAGGCAGCTAATGAGCACGGTGTTCAGATCAAGCTAGTTCTCACCACTCATCATCACTGGGATCATGCTGGCGGGAACGAGAAATTGAA GCAGTTAATCCCCGAGATCAAAGTCTATGGAGGCTCTCTTGACAAAGTCAAGGCTTGTACTGACGCAGTTGATAATGGTGATAAGATATCTCTTGGTGCT GATGTTAATATACTTGCTCTCCATACTCCTTGCCACACAAAAGGACACATAAGCTACTATGTCACTGGCAAGGAGGGAGAAGACGGAGTTGTTTTCACCG GTGACACCCTGTTTATAGCTGGCTGTGGTAAGTTCTTCGAGGGAACGGCAGAGCAGATGCACCAATCACTCTGTGTAACATTGGCTTCGTTGCCAAAACC TACTCAAGTGTACTGTGGCCATGAGTACACGGTGAAGAATCTACAGTTTGCACAAACGGTTGAACCGGACAACGAAAAGATTCAACAGAAGCTAACATGG GCTCAGCAGCAAAGGCAAGCAGGATTACCTACTATTCCCTCAACCATTGAGGAAGAAATGGAGACTAACCCATTTATTCGAGCTGATCTTCCGGATCTCC AGTCGAAAGTTGGGTGTAAATCTGGTGTGGAAGCTCTGGGGAAGATAAGGGAGATGAAGGATAGCTGGAGAGGCTAA
AA sequence Show only first row Show all	>Lus10029086 pacid=23151655 polypeptide=Lus10029086 locus=Lus10029086.g ID=Lus10029086.BGIv1.0 annot-version=v1.0 MKIFHVPCLEDNYAYLIIDEATREAAVVDPVEPEKLVKAANEHGVQIKLVLTTHHHWDHAGGNEKLKQLIPEIKVYGGSLDKVKACTDAVDNGDKISLGA DVNILALHTPCHTKGHISYYVTGKEGEDGVVFTGDTLFIAGCGKFFEGTAEQMHQSLCVTLASLPKPTQVYCGHEYTVKNLQFAQTVEPDNEKIQQKLTW AQQQRQAGLPTIPSTIEEEMETNPFIRADLPDLQSKVGCKSGVEALGKIREMKDSWRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029086 [exp]	0	1
AT1G61780			postsynaptic protein-related (...		Lus10007644 [exp]	1.0	0.8905
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Lus10028341 [exp]	2.4	0.8798
AT4G30900			DNAse I-like superfamily prote...		Lus10036262 [exp]	6.0	0.8626
AT1G78790			unknown protein		Lus10042782 [exp]	8.2	0.8563
AT5G04750			F1F0-ATPase inhibitor protein,...		Lus10034146 [exp]	11.3	0.8660
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	12.0	0.8633
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	13.6	0.8882
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10034259 [exp]	13.7	0.8529
AT5G61310			Cytochrome c oxidase subunit V...		Lus10010008 [exp]	13.8	0.8538
AT4G27745			Yippee family putative zinc-bi...		Lus10033226 [exp]	15.7	0.8609

Compare expression of checked genes

Lus10029086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.