Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13266 62 / 4e-12 unknown protein AT3G13950 62 / 4e-12 unknown protein AT5G51160 40 / 0.0004 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029008 [exp] 213 / 3e-67 AT5G51160 121 / 8e-30 Ankyrin repeat family protein (.1) Lus10034256 [exp] 182 / 1e-55 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) Lus10034255 [exp] 167 / 8e-50 AT5G51160 125 / 4e-31 Ankyrin repeat family protein (.1) Lus10029007 [exp] 152 / 8e-44 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10029006 [exp] 103 / 9e-27 AT5G51160 84 / 1e-17 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223800 [exp] 64 / 2e-12 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 54 / 1e-08 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.014G051100 [exp] 50 / 1e-07 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 47 / 2e-06 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.012G113800 [exp] 45 / 5e-06 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029088 pacid=23151760 polypeptide=Lus10029088 locus=Lus10029088.g ID=Lus10029088.BGIv1.0 annot-version=v1.0 ATGAGTTTCCAAGCCGCAACCAACCCTCCGGGCGGAGTATGGGATGAGAACAAGACAAGCTCCAATTCCGGAAAACTCTGCGACAACGCACCAAACATCT GTAAAGCTGGAACTGCAATGCTGGCTTATGGAGATGATCCAGGTTTGCTGGATATGTTTGTGGCATTCAACACTGTTGCATTTGGTTTTTCTCTAGGGAT CATCCTTCTGATCGTCGGCGGGTTCCCAATTAAGAACAAGTTTGTGACGTGGTTGCTGATCCAAGGTATATGCTTTGCTCTCACCTTTATCACATTGGCA TTTATAGTTGCTGGAATGCTGGTTATTCCAGATCGTGTAGTCCTGATTTCGAATGATTTCTGGAGATACCTACTTAAAGGTTGGCTTATGTTGATTGGGG TGATTAGTCTGCTCGACTCGCTGCGACTCGTGCTCTGGGTTTTCAGCAAGCTGCGTAAACTTGGTAAAGCATTGGGGTGTTGTTCCATCAAGGAAGGGGA GCTCCTGGTTTGA
AA sequence Show only first row Show all	>Lus10029088 pacid=23151760 polypeptide=Lus10029088 locus=Lus10029088.g ID=Lus10029088.BGIv1.0 annot-version=v1.0 MSFQAATNPPGGVWDENKTSSNSGKLCDNAPNICKAGTAMLAYGDDPGLLDMFVAFNTVAFGFSLGIILLIVGGFPIKNKFVTWLLIQGICFALTFITLA FIVAGMLVIPDRVVLISNDFWRYLLKGWLMLIGVISLLDSLRLVLWVFSKLRKLGKALGCCSIKEGELLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13950			unknown protein		Lus10029088 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Lus10029089 [exp]	1.0	0.9503
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	1.4	0.8884
AT1G11070			unknown protein		Lus10038307 [exp]	4.9	0.8589
AT1G28250			unknown protein		Lus10014006 [exp]	5.3	0.8372
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10014901 [exp]	8.5	0.8435
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	10.7	0.8505
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	12.0	0.8384
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	13.0	0.8499
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	14.1	0.8613
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	14.9	0.8504

Compare expression of checked genes

Lus10029088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.