Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15500 93 / 5e-21 Ankyrin repeat family protein (.1.2) AT5G51160 91 / 1e-20 Ankyrin repeat family protein (.1) AT5G60070 87 / 7e-19 ankyrin repeat family protein (.1) AT4G10720 83 / 8e-18 Ankyrin repeat family protein (.1.2) AT3G09550 84 / 9e-18 Ankyrin repeat family protein (.1) AT5G54620 82 / 2e-17 Ankyrin repeat family protein (.1) AT1G07710 81 / 1e-16 Ankyrin repeat family protein (.1) AT3G12360 79 / 3e-16 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT4G03480 78 / 6e-16 Ankyrin repeat family protein (.1) AT5G02620 77 / 1e-15 ATANK1, ANK1 ankyrin-like1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034255 [exp] 389 / 6e-134 AT5G51160 125 / 4e-31 Ankyrin repeat family protein (.1) Lus10034256 [exp] 377 / 3e-129 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) Lus10029007 [exp] 368 / 3e-125 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10029008 [exp] 357 / 3e-121 AT5G51160 121 / 8e-30 Ankyrin repeat family protein (.1) Lus10029006 [exp] 133 / 3e-36 AT5G51160 84 / 1e-17 Ankyrin repeat family protein (.1) Lus10041537 [exp] 120 / 6e-31 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10024844 [exp] 100 / 4e-23 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10037894 [exp] 95 / 2e-21 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10003308 [exp] 94 / 3e-21 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223800 [exp] 154 / 2e-43 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 147 / 8e-41 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 144 / 3e-39 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.018G050600 [exp] 132 / 1e-37 AT5G15500 91 / 1e-21 Ankyrin repeat family protein (.1.2) Potri.015G111300 [exp] 119 / 1e-30 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 112 / 5e-28 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.012G113800 [exp] 108 / 1e-26 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.001G187600 [exp] 108 / 4e-26 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 106 / 2e-25 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.007G145200 [exp] 87 / 6e-19 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10029089 pacid=23151850 polypeptide=Lus10029089 locus=Lus10029089.g ID=Lus10029089.BGIv1.0 annot-version=v1.0 ATGGCGGCGAATGATGTATCCGCTCTTTACGGAGCAGCAATGACAGGCAACACATCAACCCTCCAGAAACTAATCCACAGAGACAGCCTGATTCTCAGGA GATCCACAGCGATCACTTCCTTTAGCGAAACCCCCTTGCACATCTTGGTCCTGGCGGGCCACGTAGATTTCACCAGGGAGATTCTGCATCAGGATCCTGA AATGGCGAAGGAAGTTGACTCTTCAAATTCGACGCCACTTCACTTGGCTGCTGCTGCTGGACATGCAGAGATCGTCAGGATTCTACTGAATGTAGGAAAG GGAAAGGCTGATGCTTGCTTGATTCACGACGGAGATGGTAGGATCCCTCTCCATCTGGCTGTGATTCGAGGCCGAGTTGGTATTGTCCAGGAGCTGGTCA TGGCGAGACCGGAGTCTGTGGTGGAGAAACTGGATGGTGATACTGTTCTGCACTTGTGTGTAAAGTATAATCATTTGGAGGTTTTGATGTTGCTGGTGGA AATGATTGTTGTGTCATCGATTATGTGGTTGGGAGATCAAGATGGGAACACTGTTTTGCATCTAGCTGTCATGTTGAAGCAGCTTCAGACAACAAGTTAC TTAGCTTCACTGCCTAACATGCGAGAATCAGCACTGAACTTGTTGAATGGACATGGCTCAACACCCTTAGATTGCCTCGAGCTGTATCCTAAAGACTACA AGAGCCAACGAATTCGAGACATTCTAGTCGAGGCAGGAGGGGGTCGTCGATCACAGGGTTATCATCCGACACCACCGAATCATGTTCCATTGCCGTCCAA AGAAGCAGCACCAAGGAGGAGGAGAAAAAAATGTCATGCTGCAGATCAATGGGCAGTAAGATCAAGTCTTTTCTGGCATACGACACAAACTGGCTGGAAA AGATGA
AA sequence Show only first row Show all	>Lus10029089 pacid=23151850 polypeptide=Lus10029089 locus=Lus10029089.g ID=Lus10029089.BGIv1.0 annot-version=v1.0 MAANDVSALYGAAMTGNTSTLQKLIHRDSLILRRSTAITSFSETPLHILVLAGHVDFTREILHQDPEMAKEVDSSNSTPLHLAAAAGHAEIVRILLNVGK GKADACLIHDGDGRIPLHLAVIRGRVGIVQELVMARPESVVEKLDGDTVLHLCVKYNHLEVLMLLVEMIVVSSIMWLGDQDGNTVLHLAVMLKQLQTTSY LASLPNMRESALNLLNGHGSTPLDCLELYPKDYKSQRIRDILVEAGGGRRSQGYHPTPPNHVPLPSKEAAPRRRRKKCHAADQWAVRSSLFWHTTQTGWK R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51160			Ankyrin repeat family protein ...		Lus10029089 [exp]	0	1
AT3G13950			unknown protein		Lus10029088 [exp]	1.0	0.9503
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	3.2	0.8860
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	5.7	0.9028
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	5.7	0.9028
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	9.5	0.8761
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	11.1	0.8969
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	11.3	0.8508
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	11.7	0.8695
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	14.5	0.8788
					Lus10000019 [exp]	19.0	0.8474

Compare expression of checked genes

Lus10029089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.