Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25545 317 / 9e-110 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013064 [exp] 511 / 0 AT3G25545 319 / 2e-110 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134600 [exp] 348 / 5e-122 AT3G25545 271 / 1e-91 unknown protein Potri.008G110700 [exp] 332 / 2e-115 AT3G25545 247 / 6e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029095 pacid=23151809 polypeptide=Lus10029095 locus=Lus10029095.g ID=Lus10029095.BGIv1.0 annot-version=v1.0 ATGGAAGATGTGATTACAGAAATTCCACCTCCTTCAAGATTCTTCCAGGAAGATCTCAACAACTTTGCACCTCCATCGGAGCCTCTTCCTTCTCCTTTCC TTGTGTTATCAAATCCTAAAACCGACCAACCCCTCCGCCCTTCTCTTTTGGTCGTGGCTATATCGTCGCCATCTTTATATCTCCTCCATAACCTGAGCAA GAAGACTCTGCTCGGAAGCCTCGTACTACCTGAGATCCCTTTCTCGGGAAACTCTATCGAACTAGCGCTCAGTGACAAATCCTGCAATATATATGCCCTC GGAGATGCTGCTGATAATTCGACTCTCCTAGTGTCAGTTCAGTGCTCGGTCAGTGCTGACCGGTCCAATATAGTTGCTAAACTGCTTGTTGGTAACCGAA TCGTTCCGGAAAGGGTTCTGATTTTGGGTTCGGTTCAGAGCCAAAATTTCCGGGGGAAGCTCTCCCCTGATGAGACTTATGCATTCAAGCTGGAAACTTT GGCAGAGAGGAAGAAAGGTTCGTCCTTACTGAAAGGACTCGACTATTTTCCATCGGGTAGCATGGTGGATGGCTTGGCGGCTGCAGTTTTAGCTCGATGC CAGATGAAGAACGTCAGGGGAACTTTATGTGTCTCTTGGCCTGACCATGGGAGTTCGGTTATAACCCTGGTTAAATCTCTTCTGAAGAACGATGAGCTGC ATGGATTTGATCTGAGTTCAACCGAAGACAAACATTCAAGGATAAACCAGATCATGGATCATCCTTTTGATTCTGACCTCTATACTTGA
AA sequence Show only first row Show all	>Lus10029095 pacid=23151809 polypeptide=Lus10029095 locus=Lus10029095.g ID=Lus10029095.BGIv1.0 annot-version=v1.0 MEDVITEIPPPSRFFQEDLNNFAPPSEPLPSPFLVLSNPKTDQPLRPSLLVVAISSPSLYLLHNLSKKTLLGSLVLPEIPFSGNSIELALSDKSCNIYAL GDAADNSTLLVSVQCSVSADRSNIVAKLLVGNRIVPERVLILGSVQSQNFRGKLSPDETYAFKLETLAERKKGSSLLKGLDYFPSGSMVDGLAAAVLARC QMKNVRGTLCVSWPDHGSSVITLVKSLLKNDELHGFDLSSTEDKHSRINQIMDHPFDSDLYT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25545			unknown protein		Lus10029095 [exp]	0	1
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	1.7	0.8619
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10024396 [exp]	2.4	0.7448
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10004885 [exp]	2.8	0.8399
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	3.5	0.8030
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10028437 [exp]	6.0	0.7276
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10026965 [exp]	8.5	0.7591
AT4G18905			Transducin/WD40 repeat-like su...		Lus10001126 [exp]	11.4	0.7324
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10041296 [exp]	11.6	0.7327
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Lus10026087 [exp]	16.5	0.7253
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013171 [exp]	17.7	0.6673

Compare expression of checked genes

Lus10029095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.